| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_3062 |
|---|
| Symbol | |
|---|
| ID | 3580038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 3576718 |
|---|
| End bp | 3578142 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637686795 |
|---|
| Product | protein phosphatase 2C-like |
|---|
| Protein accession | YP_291118 |
|---|
| Protein GI | 72163461 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0631] Serine/threonine protein phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00558874 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTATCG CACTTCGCTA CGCGGCGTAC TCCGACGTCG GCTGCCTGCG AGAGGGCAAC
GAAGACTCCG GTTACGCGGG CCCCAACCTG CTGGTCGTGG CTGACGGGAT GGGAGGTCAC
GCGGGCGGCG AAATCGCCAG CTCCCTGGCC GTGCACTCGC TGATGCCTCT CGACGAGGAC
ATCCCCAGCG GCGAGATGGT CAAAGCCCTC CAGGAAGCTG TCGCGGCAGC AAACGAGGCA
CTGGCCCGCA AGGTCATCGA AGAGCCCCAC CTCGAAAACA TGGGCACCAC CCTGACCGCC
ATGCTGTGGT CAGGCTCCCG CATGGTCCTC GTTCACGTGG GCGACTCCCG CGCCTACCAG
CTCCGCAACA ACGAGCTCAA ACAGATCACC AGCGACCACA CCCTCGTGCA GACCCTGGTC
GACGAAGGCA AGATCACCGA GGACGAGGTC GCCACCCACC CCCAACGCTC CCTCCTCCTC
CGCGCCATCC AAGGCCAAGG CCGCGTCGAC CCGGACGTCT CCGTGTGGAA AGCCGAAGTC
GGCGACCGCT ACCTCCTCTG CTCCGACGGC CTGTCGGGTG TGGTGAGCAA AGAAACAATC
CACGAAACCC TCGCCAGCGC TCCCACCCCC GCAGATGCGG CGTCCCGCCT CATCGAACTC
GCCCGCCGCG GCGGCGGACC CGACAACATC ACCGCGGTCG TCGCCGACGT CATCGACACC
GCCATCGACC CGGTGGGGCC CACCGCTACC CCCACCGTGG TTGGCGCGGC AAGCCAACGC
CGCGAACCCT TCTTCACCCC CTCTGACACC CCTGCGGGAC GCGCCCAGGA ACTCGCCCGC
GCCACCACCG CCAACGCTGG CGACACCGCC GAAATGGAGC GCATCCCCCC CTACGAACCG
GAGGAAGACG ACTTCGAACC GCCCCGCACC CGCCGCTGGT GGCCGATGGT GGTCACTTTC
CTCATCATCG TGGCCGTCGT GGCCGGCGTG GGCTTCTACT TCGGCCGCCA ATTCCTCCTC
AGCCAGTACT TCGTGGGGGC GAGCCCCGAC GGCGAAGTCG CCATCTACCA AGGCATCAAC
ACCGACATCG CGGGCTATAG CCTGGCTACT GAACTGCAGC GCACCGGCAT CCCCCTCGAC
GGGCTCCCCG TCACCGAACG CGAGTCGGTT GAGCGCAGTA TCACCGTCGA CAGCCTCAGC
GAGGCCGAAG AGCGGGTCGC TGCCCTACGG GAGACCTTCG AAAACTGCCA GCGTGACCCT
GCCTCCTGCG GCCTCGACGA CGCCGACGAC GACCCCCAGC CGCCGGTCAC CCCCAGCCGG
GGCACGACGA CGGACACACC AGCAGGAGGA CCCTCCGCCC CCACCCCCGC CACCGACGCG
GAGCAGCGGG CGAACGACGC GCAGGGCAAT GGAGGCCAGC AATGA
|
|---|
| Protein sequence | MTIALRYAAY SDVGCLREGN EDSGYAGPNL LVVADGMGGH AGGEIASSLA VHSLMPLDED
IPSGEMVKAL QEAVAAANEA LARKVIEEPH LENMGTTLTA MLWSGSRMVL VHVGDSRAYQ
LRNNELKQIT SDHTLVQTLV DEGKITEDEV ATHPQRSLLL RAIQGQGRVD PDVSVWKAEV
GDRYLLCSDG LSGVVSKETI HETLASAPTP ADAASRLIEL ARRGGGPDNI TAVVADVIDT
AIDPVGPTAT PTVVGAASQR REPFFTPSDT PAGRAQELAR ATTANAGDTA EMERIPPYEP
EEDDFEPPRT RRWWPMVVTF LIIVAVVAGV GFYFGRQFLL SQYFVGASPD GEVAIYQGIN
TDIAGYSLAT ELQRTGIPLD GLPVTERESV ERSITVDSLS EAEERVAALR ETFENCQRDP
ASCGLDDADD DPQPPVTPSR GTTTDTPAGG PSAPTPATDA EQRANDAQGN GGQQ
|
|---|
| |