| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2878 |
|---|
| Symbol | |
|---|
| ID | 3581783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 3390040 |
|---|
| End bp | 3393192 |
|---|
| Gene Length | 3153 bp |
|---|
| Protein Length | 1050 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637686607 |
|---|
| Product | DNA and RNA helicase |
|---|
| Protein accession | YP_290934 |
|---|
| Protein GI | 72163277 |
|---|
| COG category | [L] Replication, recombination and repair
[S] Function unknown |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases
[COG1379] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00375] conserved hypothetical protein TIGR00375 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.015904 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAGTTCC ACGCCGATCT ACATATCCAC TCCAAGTACT CGCGGGCGTG CAGCAAAGAT
TCCGATCTGG AACACCTCGC GTGGTGGGCT GCCCGCAAGG GGATCGCCTT GGTCGGAACC
GGTGATTTCA CTCACCCTGC CTGGCGGGCC GAGTTGGAGC GCGACCTGGT CCCCGCAGAA
CCCGGTCTTT TCCGGTTGCG CCCCGAAATC GAGTCGCGCA TCCTGCGGAC TCTGCCACCG
AACTGCCGCA CCCTGCCCCG CTTCATGCTC TCCGTGGAGA TCTCCACGAT CTACAAACGC
GACGGCCGCA CCCGCAAAGT GCACCACCTG CTTTATGCGC CGTCGTTTGA GGCGGCCGGG
CGGATTACCG CCGACCTCGC CAAGATAGGC AACCTCGCCT CGGACGGCCG CCCCATTCTG
GGCCTGGACT CCCGCGACCT GCTGGACATT ACGCTCTCCA GCGATCCCGG CTCCTATCTC
GTGCCCGCCC ATATCTGGAC CCCGTGGTTT TCGGCCCTGG GCTCCAAATC CGGTTTCGAC
AGCATCGCCG ACTGCTACGC CGACCTGGCT GACCACATCT TCGCGGTGGA GACCGGGCTG
TCCAGCGACC CGGCCATGAA CTGGATGGTC TCTTCCCTCG ACTCCTACAC CCTGGTGAGC
AATTCCGACG CGCATTCCCC GCCGATGCTG GCGCGGGAAG CGACCCGGTT CGACACCGAT
CTCGACTATT ACGCGGTGCG GCGGGCTTTG GAGACCGGGG AAGGCTTCCG CGGCACGGTC
GAATTCTTCC CCGAGGAAGG GAAATACCAC CTGGACGGGC ACCGCAAATG CGGGATCCGC
TTCGACCCGC AGGCCACCCG GGACCACCAT GGTCGCTGCC CGGTGTGCGG GAAACCGCTC
ACGGTCGGCG TCTTCCACCG GGTCAGCGAA CTCGCTGACC GGTCTGAAGG CTACCGGGTG
CCAGGGGCGG CGGACTTCAC CAGCCTGGTT CCGCTGCCGG AGATCGTCAG CGAGATCGTG
GGTGTGGGCC CGAAGAGCAA ACGCGTCATG GGCGAAGTGA CCCGCCTGGT CGGTGAACTC
GGCCCCGAGT TGGACATTCT GCAGTCGGTC CCCTTGGACG AGGTGACTCG GGTCGGCGGG
GAACTGCTGG GGGAGGCGAT CACCCGACTG CGCCGCGGCG AGGTCATCCG GGAAGCCGGC
TACGACGGCG AATACGGCGT GATCCGCATG TTCCAGCCTG AGGAGCTGCG CTCCAAGAAC
ACTACGCCGA CCCTCTTCGG CGACCTCGAC CTTCCGGAGC AAGCCCCGGC TGCTCCGCGG
ACGGCGCGCC GCTCCGCCCC GTCGGCGCCA ACCCCCGCAC CGGAGCCGGT AACACCAGCG
GACACCGACG CCGAGCCCGC GCTTTTCTCG GCCGAGGAAA CCTCGTCCCA GCCGTCGCCC
GCCAGCCTGC TGGACGGCCT GGACCCGGAC CAGCGGGCCG CCGCAGAACA CACCGGGGGG
CCACTGCTCA TCGTCGCCGG CCCCGGCACG GGGAAGACCC GCACCCTGAC GCATCGGATC
GCCTACGTGG TGGCGGAACG CGGTGTTCCC GCCAGCCAGT GTTTGGCGAT CACGTTCACC
CGGCGGGCAG CCGACGAGCT GCGGGAACGG CTGCACGCGC TCCTCGGCGA ACGCGCCGCG
GACATGACCA TCACCACGCT GCACGGCCTG GGCGCGCTGA TCCTGCGGGA GCAGTACGCG
CGGGCCGGGC TGAGCCCCGA CTTCACCATC GCCGACGACA GCCTGCGTCA GGAGATCGCC
GCCGAGATCG CCGGTTCTGC CGGGGAAGGG CGGCGGCTCC TCGCCCGCCG GGAGACGGCG
CTGCACGAGG ACGACGCAGA GATCGCCCGG TTTGATGCCC GGCTGCGGGA AGCGAACCTG
GTGGACTTCA CCGACCTGAT CCGGTTGCCG GTGCGGCTGC TCTCCGCGGA CGAGGAGCTC
GTCGCCCACT ATCGGAGCCG CTGGCCGTAC ATCAGCGTGG ACGAATACCA GGACGTGGAC
GAAAGCCAGT ACGCGCTGCT GCGGCTCTTG GCCGGCCCGG AGGCGAACCT CACGGTGATC
GGCGACCCCG ACCAGGCCAT CTACGGGTTC CGCGGCGCTG ATGTGGGCTT CTTCCTGCGG
TTCACCGAGG ACTATCCGAG CGCGCGCACC GTCCAGTTGA CCCGCAACTA CCGGTCCAAC
TCCACGATCG TCAACGCTGC GCTGCAGGCG ATCGCCCCCG CCTCGCTGGT GCCGGGGCGG
ACGCTGCGCG CCGTGGGCCA GTTCGGTGAG GCGCCGCGGA TCGGCGTGCA CGTTGCAGCC
GACGAGTACG CCGAGGCGTC GTTCGTGGCC CGCGCGATCG ACCGGCTGCT TGGTGGGACG
TCGCTGCACT CGCTGGACAG CGGCCGGGTC ACCGAGGACG GGGACGATTC GCTGTCGTTC
AGCGACATCT GCGTGCTGTA CCGCACCGAT GCGCAGAGCG AGGCGATCAT CAGCGCGTTC
AACACGGCGG GCATCCCGTT CCAGAAGCGT TCGCACGACC GGCTGCTGTC CCGCCCGGAG
ATGCGGATCC TCGTCGCGGA GCTGCCACAC CAGCCGGACG GTCCGGTGGT CGACCGGGTG
CGGTCCGCGG TGGAGACGCT GTGTCGCCGC TATGCCGACA ACGAGCGGCG GGTCACCGAC
GTACGGGCCG CCGGGGAACT GGTGGCCCCG CTGGCGGAGC GGTGCGGCAC CGACCTTTCC
GAGTTCCTCT CCGCGTTGGC GCTCGGCGCT GAAGTGGACG CCTTGGATCC GCGGGCCGAC
CGGGTGTCGC TGCTGACCTT GCACGCCGCT AAAGGGCTCG AATACCCGGT GGTGTTCCTG
GTGGGCTGCG AGGACGGGCT GCTGCCGTTC TTCTTCCCGG GTGAGGAGCA CGAGGACACG
GCTGAGGAGC GCCGCCTGTT CTTCGTGGGG ATCACGCGGG CGCAGCGTCG GCTGTACCTG
TCCCGGGCGC GGCGGCGCAC GCGGCGGGGC CGCACCTTCG ACGCGGCACC GTCTCCTTTC
CTCGCGGCCA TTGACGCGAA GCTCACCATG GCGGTGGATG CGGAGTCGGC GCTCCGGAAG
CGCCCGAAGG ACCGGCAGTT GCGGCTGCTC TAG
|
|---|
| Protein sequence | MEFHADLHIH SKYSRACSKD SDLEHLAWWA ARKGIALVGT GDFTHPAWRA ELERDLVPAE
PGLFRLRPEI ESRILRTLPP NCRTLPRFML SVEISTIYKR DGRTRKVHHL LYAPSFEAAG
RITADLAKIG NLASDGRPIL GLDSRDLLDI TLSSDPGSYL VPAHIWTPWF SALGSKSGFD
SIADCYADLA DHIFAVETGL SSDPAMNWMV SSLDSYTLVS NSDAHSPPML AREATRFDTD
LDYYAVRRAL ETGEGFRGTV EFFPEEGKYH LDGHRKCGIR FDPQATRDHH GRCPVCGKPL
TVGVFHRVSE LADRSEGYRV PGAADFTSLV PLPEIVSEIV GVGPKSKRVM GEVTRLVGEL
GPELDILQSV PLDEVTRVGG ELLGEAITRL RRGEVIREAG YDGEYGVIRM FQPEELRSKN
TTPTLFGDLD LPEQAPAAPR TARRSAPSAP TPAPEPVTPA DTDAEPALFS AEETSSQPSP
ASLLDGLDPD QRAAAEHTGG PLLIVAGPGT GKTRTLTHRI AYVVAERGVP ASQCLAITFT
RRAADELRER LHALLGERAA DMTITTLHGL GALILREQYA RAGLSPDFTI ADDSLRQEIA
AEIAGSAGEG RRLLARRETA LHEDDAEIAR FDARLREANL VDFTDLIRLP VRLLSADEEL
VAHYRSRWPY ISVDEYQDVD ESQYALLRLL AGPEANLTVI GDPDQAIYGF RGADVGFFLR
FTEDYPSART VQLTRNYRSN STIVNAALQA IAPASLVPGR TLRAVGQFGE APRIGVHVAA
DEYAEASFVA RAIDRLLGGT SLHSLDSGRV TEDGDDSLSF SDICVLYRTD AQSEAIISAF
NTAGIPFQKR SHDRLLSRPE MRILVAELPH QPDGPVVDRV RSAVETLCRR YADNERRVTD
VRAAGELVAP LAERCGTDLS EFLSALALGA EVDALDPRAD RVSLLTLHAA KGLEYPVVFL
VGCEDGLLPF FFPGEEHEDT AEERRLFFVG ITRAQRRLYL SRARRRTRRG RTFDAAPSPF
LAAIDAKLTM AVDAESALRK RPKDRQLRLL
|
|---|
| |