| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2580 |
|---|
| Symbol | |
|---|
| ID | 3581052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 3045031 |
|---|
| End bp | 3047295 |
|---|
| Gene Length | 2265 bp |
|---|
| Protein Length | 754 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637686299 |
|---|
| Product | ATP-dependent DNA helicase PcrA |
|---|
| Protein accession | YP_290636 |
|---|
| Protein GI | 72162979 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01073] ATP-dependent DNA helicase PcrA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCCTCCC AAGAGCAGCT TCTCGAAGGT CTCAACGAGC TCCAGCGCGC CGCGGTGCTC
CACCACGGCA GCCCGCTGCT GATCATCGCT GGAGCGGGGT CAGGCAAGAC CCGTGTCCTC
ACCCACCGCA TCGCCTACCT GCTGGCCGAG CGGGGAGTCC GCCCCAGCGA GGTGCTCGCG
ATCACCTTCA CCAACAAAGC CGCAGCCGAG ATGAAGGAGC GTGTCGAGCG GCTGCTCGGT
GAACGCACGG CCAGCGCCAT GTGGGTGATG ACCTTCCACT CGGCCTGTGT GCGCATCCTG
CGCCGCGAGG CGGCCCGCCT GGGATACCCC AGCAGTTTCA CCATCTACGA CTCCGCGGAC
TCCCAGCGGC TGATGCAACT GGTCTGCCGC GAACTCGACC TGGACCCCAA ACGCTTCCCG
CCCAAGTCGT TCTCCGCCCA GGTGTCGAGC CTGAAGAACG AACTGGTGGA CTACGACACG
TTCGCGGGGC GGGCAGAAAC CGTGCAGGAG CGCGCTCTCG CGGAGGCGTA CCAGCTCTAC
CAGCAGCGCC TCTACGAGGC GGGGGCGATG GACTTCGACG ACCTCATCAT GGTCACGGTC
CATCTGCTGC AGATGTTCCC CGAGGTCGCC GAGCACTACC GGCGGCGGTT CCGGCACCTG
CTGGTCGACG AGTACCAGGA CACCAACCAC GCCCAATACG CCCTGATCCG GGAGCTCGTA
GGCGACGGCG ACCCCGCCAC CCCGGGACCG GAATTGTGCG TGGTGGGCGA CGCCGACCAG
TCCATCTACG CCTTCCGCGG GGCGACGATC CGCAACATTC TGGAGTTCGA GCGCGACTAC
CCGCAGGCCA CCACCATCCT GCTGGAGCAG AACTACCGGT CCACGCAGAC CATCCTCTCC
GCAGCCAACG CCGTTATCGC GCACAACACG GAGCGCCGCC CGAAAAACCT GTGGTCCGCC
CAGGGAGAGG GCGAGCCTAT CGTCGGCTAT GTCGCCGACG ATGAGCGCGA CGAGGCAACG
TTCGTCGTCC AGGAGATCGA CGCCCTCACC GACGCGGGAA CCTGCACCCC CGGCGATGTC
GCGGTGTTCT ACCGGACCAA CGCCCAGTCC CGCGTACTGG AGGAAGTGTT CGTCCGCACC
GGCATGCCGT ACCGGATCGT CGGCGGGGTG CGGTTCTACG AACGCAAGGA GATCCGCGAC
ATCCTCGCCT ACCTCCGCGT GCTGGCCAAC CCTGAGGACT CGGTGAGCCT GCGCCGCATT
CTGAACGTGC CGAAACGCGG GATCGGGGAG CGGGCCGAGC AGGTCATCGA ACAGTTCGCG
GCACAGGAGC GGATCACGTT CGCGCAGGCC CTGCGCCGCG CAGACGAAGC ACCGGGAATC
GCCACCCGCT CGCTCAAAGC GATCAAAGAG TTCGTCGCGC TCCTCGAAGA ACTCGAGGAG
CTGGCTGCCA CCCGCAGCCC GGCCGAGACG ATTGAAGCGG TCCTGGAACG CACCGGCTAC
TTGGAAGAGC TCGTCAACTC CAAGGACATC CAGGACGAGA GCCGCGTGGA GAACCTCGAG
GAGTTCGTCG GCGTCGCCCG CGAGTTCGAA TCGTCTTTTG ACGCCGCGCT GGCCGCAGAA
GGAGCCGACG GGGAAACCGG CCGCGACGGT GCGGAACCGA CCCTGGTGGA CTTCCTCGAG
CAGGTCTCCC TCATCGCCGA CACCGACCAG CTCCCTGACG AGGACGACCA GGGCGGGGCC
GTCACCCTCA TGACCCTCCA CTCGGCCAAA GGATTGGAGT TTCCCGTGGT CTTCCTCACC
GGGTTGGAGG ACGGGGTCTT CCCGCACCTG CGGGCGCTCG GCGACCGGTC CGCACTGGAA
GAGGAGCGGC GGCTGGTCTA CGTCGGTATC ACCCGTGCCC AGGAGCGGCT CTACCTGACC
CGGGCTGCGA CACGCAGCTC CTGGGGGGCC GCGGCCTACA ACCCTCCGTC GCGGTTTTTG
GACGAGATTC CCGCAGAACT CGTGACCTGG CGCCGGGCAG AGTCCACGAC GGAGGCGCTC
CGCCGTTCCG TGTCCCCTGC CCGCACGTCG CGGCCGACCC GCAAGGCCGA GCGCCCGGTG
CTAGCGCTGC GGCCAGGCGA CAAGGTGAAC CACGACTCCT TTGGGCTGGG CACCGTGCTC
TCGGTCGACG GCACCGGGGA TCGGACGCGG GCCCGTGTCG ACTTCGGAGC GGGGGTCGGG
CAGAAGGACC TCATGGTCAA GTTCGCTCCG TTGGAGAAGC TCTGA
|
|---|
| Protein sequence | MSSQEQLLEG LNELQRAAVL HHGSPLLIIA GAGSGKTRVL THRIAYLLAE RGVRPSEVLA
ITFTNKAAAE MKERVERLLG ERTASAMWVM TFHSACVRIL RREAARLGYP SSFTIYDSAD
SQRLMQLVCR ELDLDPKRFP PKSFSAQVSS LKNELVDYDT FAGRAETVQE RALAEAYQLY
QQRLYEAGAM DFDDLIMVTV HLLQMFPEVA EHYRRRFRHL LVDEYQDTNH AQYALIRELV
GDGDPATPGP ELCVVGDADQ SIYAFRGATI RNILEFERDY PQATTILLEQ NYRSTQTILS
AANAVIAHNT ERRPKNLWSA QGEGEPIVGY VADDERDEAT FVVQEIDALT DAGTCTPGDV
AVFYRTNAQS RVLEEVFVRT GMPYRIVGGV RFYERKEIRD ILAYLRVLAN PEDSVSLRRI
LNVPKRGIGE RAEQVIEQFA AQERITFAQA LRRADEAPGI ATRSLKAIKE FVALLEELEE
LAATRSPAET IEAVLERTGY LEELVNSKDI QDESRVENLE EFVGVAREFE SSFDAALAAE
GADGETGRDG AEPTLVDFLE QVSLIADTDQ LPDEDDQGGA VTLMTLHSAK GLEFPVVFLT
GLEDGVFPHL RALGDRSALE EERRLVYVGI TRAQERLYLT RAATRSSWGA AAYNPPSRFL
DEIPAELVTW RRAESTTEAL RRSVSPARTS RPTRKAERPV LALRPGDKVN HDSFGLGTVL
SVDGTGDRTR ARVDFGAGVG QKDLMVKFAP LEKL
|
|---|
| |