Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_2083 |
Symbol | |
ID | 3579343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 2442604 |
End bp | 2444622 |
Gene Length | 2019 bp |
Protein Length | 672 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637685779 |
Product | PAS/protein phosphatase 2C-like |
Protein accession | YP_290139 |
Protein GI | 72162482 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAACGGAT CGACCGGCAC AACGGACGGC TTCGCCGGTT CTGGAGGAAA GACTGACGCC CTCGTAGCAG GGATGAGTGA TCCGGCGGGC ACGGCCTTCC AGTACGCGCC GACCGCGATG CTTGTGGCTG ACCCGGCCGG AGCGGTCCTC GCGGTCAACG ACACTTTCAC TGCTCTCCTC GGGCGCCCGT CCACAGAGAT CGCGGGACGT CCTTGGCCCG AACTGTTCAC CCCTGACGAC CACGGCCGAG CCTGGGAGCA GCACAACAAG GCACTGCGGG GCGCCGCCCC CCGACAGTGG CCCGACCTGA CGATCCGCAC CGCCGACGGG CTGTCCCGGC GCACCATCGT CCAAGCCCGG TCTTTCCCCG CCGCACCGGG CGGCGAAACC GCGGGCGTCG TCATTCAGCT CTCGCTGCTC AGCCACGACG AAGAGACCCT GCGCATCGTG ACCGAGCTGC GGCTCAGGGA AGCGAACACC GCCCTGTGGT CCCTTGACCT CACCAGCGGC ACGCTGAGCG AACTGTTCGG TCCCTCCCCG CTGGCCCGCA TGCTCGCCGG GGACGCCTGC ACCCTGGAAG AATGCCTCGC CCGAGTGCAC CGGGACGACG TCTCCCGGCT ACGCGCCGCA CTGGAAACCG CCTACCAGGG CGGCAACTAC GAGCAGCGGT TCCGCATGTT CGACCAGGTA GGAGACGAGC GATGGCTGTA CGCGCGCGCC ACCTACCTCG GGGGAGACCG GCCCCGACTG GTCGGCATCG TCGACGATAT GACCGAGCAC GTGCAGCTCG TACGCCGCTT GGCGGACCGC CGCCGCATCG AAGCAGCCCA GGGCCGTCAA GTCAACGAAC TCGCCGCCAA ATTGGTCTCC GCCACCACGG TGCAGGAGGT CACCAACCTG CTCAGCAGGG AGTTCACGCC TATTTTCGGC GGTGACGGCG CCCACGTCGT GCTGCTCGAC GACACCGAGC TCCGCCTCTA CCCGGAGAGC ACGGCAAGCA CCGGGCAGTG GCTCTACCCC GACAACCACC GGGATTCCGC CCACCCTGTC GGGGCAGTCC TCCACGACAG CCAGCCGCGC TTCTTCGAAA GCCGCTCCGA ACTCTTGGAG CGGTTCCCCG CCCTAGGAGA GGCGCTCTGC CAGACTGACG ACCACTCGTG GGCTTTCGTC CCGATGTTCG GGGACGGCAA AACCGCCATC GGCGTGTGGG TCGTGGCCTG GACCCAGCCC CACCACGCTA CTCCGGACGA ACGCGCCCTC CTGCTGACCT TGGCCGGACT CGCCGGGCAG GCCCTGCAAC GCGTCAACCG CCAAAGCGCG GAACTGGAGC TGGCCGACGC CGTCCAACGG AGGATGCTGC CCCCGCAGCC CCCCGCCTTC TCCGAACTGG ACGTGGCCGT GCGCTACCTT CCCGCCCGAG CTGGCTGGCG GGTCTGCGGC GACTTCTACG ACGCCATCCG GCTTCCCGGG CGGCGGATCG GCCTGGTGGT CGGAGACGTC CAAGGCCACG GGGTGGAGGC TGCTGCCGCT ATGGGACAGA TCCGCATGGC GTTCCGCGCC TACGCCACCA ACCAGAGCGA TCCGGGAACC GTGCTCACCG AAACCAATCG GCTCCTCACC GAAACCGGGG AGATCGTCTT TGCGACCTGC GGCTACCTGG TAATCGACAT TGACCTGGGA CAGCTGCAGG CCGCCTGGGC CGGGCAGCCT CCCGTCGTGC TCGCCACCGA GTCAGGCTTC GAAGTGTGGG AGCCCGAGAC CGGACCGCCC GTCGGGGTGG ACGCGGAAGC GAAATACCCG GTGAGCTCCC GCCCGCTCCC TCCGGGAAGC ACCTTGCTGA TGTGCTCGGA CGGGCTGGTG GAGAGCGCCG AAGTGAACAT GGACGACGGC CTGGCCGCGG TAGGCAGCGA ACTCAGCGCC AAAGTCACCG ACGTCCACGG TGCGGCGACC GCGCTCGCAG AGCTCGCCCC CGCGGGACGC GGCGACGACA TCGCTATCCT CGTCGCCCGG GTCCGCTGA
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Protein sequence | MNGSTGTTDG FAGSGGKTDA LVAGMSDPAG TAFQYAPTAM LVADPAGAVL AVNDTFTALL GRPSTEIAGR PWPELFTPDD HGRAWEQHNK ALRGAAPRQW PDLTIRTADG LSRRTIVQAR SFPAAPGGET AGVVIQLSLL SHDEETLRIV TELRLREANT ALWSLDLTSG TLSELFGPSP LARMLAGDAC TLEECLARVH RDDVSRLRAA LETAYQGGNY EQRFRMFDQV GDERWLYARA TYLGGDRPRL VGIVDDMTEH VQLVRRLADR RRIEAAQGRQ VNELAAKLVS ATTVQEVTNL LSREFTPIFG GDGAHVVLLD DTELRLYPES TASTGQWLYP DNHRDSAHPV GAVLHDSQPR FFESRSELLE RFPALGEALC QTDDHSWAFV PMFGDGKTAI GVWVVAWTQP HHATPDERAL LLTLAGLAGQ ALQRVNRQSA ELELADAVQR RMLPPQPPAF SELDVAVRYL PARAGWRVCG DFYDAIRLPG RRIGLVVGDV QGHGVEAAAA MGQIRMAFRA YATNQSDPGT VLTETNRLLT ETGEIVFATC GYLVIDIDLG QLQAAWAGQP PVVLATESGF EVWEPETGPP VGVDAEAKYP VSSRPLPPGS TLLMCSDGLV ESAEVNMDDG LAAVGSELSA KVTDVHGAAT ALAELAPAGR GDDIAILVAR VR
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