| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1778 |
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| Symbol | |
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| ID | 3580458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 2077485 |
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| End bp | 2080238 |
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| Gene Length | 2754 bp |
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| Protein Length | 917 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637685472 |
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| Product | regulatory protein, LuxR |
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| Protein accession | YP_289836 |
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| Protein GI | 72162179 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGACG TACTGATGGC CCCGGCCTCC CGCACATACG GCCGGGGTGC GGAGGTCGAA
CACCTGGTCA CCCTGGCCTC CCGCGGGCGT GAGGGGCGCG GTGGGGCACT GGTTGTCGAA
GGCAGTCCGG GGATCGGCAA GAGCGCGCTG CTGGACGCCG TCCTGGACCG GCTTGACAGT
CACCGGGTGC TCCGGGTCAA CGGCCGCCGC CCAGAATCCG GACTCCCCCT GGCCGGATTG
CACGGATTGC TGCTGCCGGT ACTGCACCTC CGGGGAACGC TCAGCCCGGA GCACGAGCGG
CTGCTGGACG ACGCCCTGCG CCGCGGCCGC TACGCCGAGG ACGACCGGTT GGCGCTATCG
GTCGCAGTCT TAGCGTTCGT CACCGCCCTG TCCCACGAAC GCCCTCTCGT GTGCGTGGTC
GACGACGCCC AATGGGTCGA CCCCGATTCG CTGTCCCTGC TCTCTTTTGC CGCCCACCGT
CTCAACCGGA TCCGGGCGGC GATTCTGTTC GCCACCCGGG ACACCGCGCC CCGGGAACTG
TCCGGGCTGC CCCGGATGCG CTTGGCCCCC TTGACGGAGG AGACCCTCCA CCAGGTGTTG
GAGGAGACCG CGCCCGACCT GGACCCGGCG GTGCGCAGCG AACTCGTACG CCGCGCCCAC
GGCAACCCTA TGGTCGCGCG CCACTACGCC GCATCGCTGT CCCCCGCCCA GCGTGCCGGC
ACCGAACCGC TGTCGGTCAT GCTGCCGCTG CCCGCGGAGA TCATGGACGC CTACGCCGAG
ACACTGGACT TCCTGCCCGC GGACGTGTCC CGGCTGCTGC TGTTGGCCGC CGTGGAACCC
GGGGTGGCGG TCCCGGTCCT GACCGCGGAG GGCGACGGCG ACTACGACCC GGTGGCGGCA
CTTGACCGGG CAGAGCGGGC CGGGCTGCTC TACGTGGAAG CCGACCGGGT GGAGTTCACC
GACCCGATGA TGGGCGAAGT GGTGTGCCGC CGCGCGACCA GCGCCGAGCT GACCCGGGCG
CACTTGGAGA TGGCGCGGCT GCTGGACGGC CGCGGCCCCC GCTACCGGGT GCTGTGGCAT
CGCGCCGCAG CCACCCGGGG CCCCGACGAG GAACTGGGAT ACGAGATCAC CTCGGCGGTC
TCGGCGGGCG AGCCCGGCCT GACCGCCCAG GAGGCGTCGA TCCTGCTGGA GCGGGCCGCT
GAGCTGACCA CGAAACCCAG CCGGCGGGCC AACCGCCTCG CGGAAGCCTC CTACCAGGCG
TGGGCGGCAG GCCAGTACAG CCGCAGCACC ATCCTCATCA AACAGGCCGC TCCCTATGTG
CCGATCGCCC GCATCCGCGG ACTGCCGGAC ATGGTCAACG GCTACCGGGC GGTCGGAGAA
GAAGACTCGG TCCAAGGCTG CGACCAGTTG ATGTCGGCGG CCCGCGAGCT CGCCGACCAC
AACCCCCAGC AGGCCCGGGC CCTGCTGCTG CGCGCCGCTG ACGCCGCTTC CCTCGCCGGG
GACATCAGCC GTTTCATCGC CGCGGCACGC CAGGCGCTCA CCCTCGACGT GTCCGACCCG
CAGCGCGACT CCGGGCTGGC CTACCTGGAA GGCTCGATGC TGGCGTTCCA GGGGAACTAT
GCGGCGGCGC TGGAACCGCT CCGCCGGTCG GTGGAGCTCG TGGAGGACGA CGATGAGCCG
CTCGGTTTGA TCCGGTCGAT CGTGGCGTCC CTGCGCCTGG GTGACGCGAT CGGGGCGCGC
CGCCAGACCG CCCGGGCGAT CGCCCGCGCC GGGGTACGCG GCACCGTGTC GATGGTGCCC
AAAGCACTGT CCTACGCCGT CTACGGCGAG TTCCTCCACG GCTCGCTGGC CACCGCGACC
GAACACGCTT CCCTGGGGCT GCGGTTGTCC ACGGAGACGG GGCAGCGCAA CTGCGCCGCC
CACCACCTGG CTGTCCTGGC CATGCTGGCG GCACTGCGCG GGGACGCGGA AGAATGCGCC
ACCCGGGTGG CGGCCGTCAC CGAGCACACC GACAGCCGGC CGTTGGGCTT GGCGCGGGCG
CTCACCGAGT GGGCCCTGGC CTACCTCGAC CTGACCCGGG GCCGGATGCA CGAGGCCGCG
ACCCGCCTCG AAGAGCTGGC GCGCAGCGAA CCCTGCCAGG GCCACCCCAC GATCCGCCTG
CTGAGCGTGC CCCACTACGT GGAGGCAGCC GTGCACATAG GGGAGACCCA GCGGGCTGAG
GCCGCGCTAG CCAGCTTCGA GCAGTGGGCC AACGCCACGC AGAGCCCCAA CGACTTGGCG
CTCGTCGCCC GCTGCCGGGC CTTGCTGAGC GACGGCGAGA CCGCCCGCGA ATACTTCGAG
GAGGCGCTCA ACCTGCACCG CCGGGGCGGG GGCGGCGGTA TCGAGGAGGC GCGGACCCGG
ATGGCGTACG GCACGCTGCT GCGCCGCTCG CGGCTGCCGT CCGCGGCCCG CCCCCACCTG
CGGGCCGCGG TGGAGGCGTT CACCCGGTTG GAGACGCCGC TGCTGCTGCA GCAGGCCAAG
GAGCAGTTGC GTGCCACCGG GGAGGCGCTC GACGACACTC CCGCACCCAC CGCGGGGCTG
ACCCCCCAGC AGGAGCAGAT CGCACGGTTG GTGGCGGAGG GCGCCACCAA CCGGGAGATC
GCGCAGCGCC TCTACATCAG TCCGCGCACT GTGGAGCACC ATCTGCGCAA CATCTTCCGC
CAGTTGCAGA TCCGCTCTCG CGTGGAGCTT GCCCGACTGA TCAGCGGACA GTGA
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| Protein sequence | MADVLMAPAS RTYGRGAEVE HLVTLASRGR EGRGGALVVE GSPGIGKSAL LDAVLDRLDS
HRVLRVNGRR PESGLPLAGL HGLLLPVLHL RGTLSPEHER LLDDALRRGR YAEDDRLALS
VAVLAFVTAL SHERPLVCVV DDAQWVDPDS LSLLSFAAHR LNRIRAAILF ATRDTAPREL
SGLPRMRLAP LTEETLHQVL EETAPDLDPA VRSELVRRAH GNPMVARHYA ASLSPAQRAG
TEPLSVMLPL PAEIMDAYAE TLDFLPADVS RLLLLAAVEP GVAVPVLTAE GDGDYDPVAA
LDRAERAGLL YVEADRVEFT DPMMGEVVCR RATSAELTRA HLEMARLLDG RGPRYRVLWH
RAAATRGPDE ELGYEITSAV SAGEPGLTAQ EASILLERAA ELTTKPSRRA NRLAEASYQA
WAAGQYSRST ILIKQAAPYV PIARIRGLPD MVNGYRAVGE EDSVQGCDQL MSAARELADH
NPQQARALLL RAADAASLAG DISRFIAAAR QALTLDVSDP QRDSGLAYLE GSMLAFQGNY
AAALEPLRRS VELVEDDDEP LGLIRSIVAS LRLGDAIGAR RQTARAIARA GVRGTVSMVP
KALSYAVYGE FLHGSLATAT EHASLGLRLS TETGQRNCAA HHLAVLAMLA ALRGDAEECA
TRVAAVTEHT DSRPLGLARA LTEWALAYLD LTRGRMHEAA TRLEELARSE PCQGHPTIRL
LSVPHYVEAA VHIGETQRAE AALASFEQWA NATQSPNDLA LVARCRALLS DGETAREYFE
EALNLHRRGG GGGIEEARTR MAYGTLLRRS RLPSAARPHL RAAVEAFTRL ETPLLLQQAK
EQLRATGEAL DDTPAPTAGL TPQQEQIARL VAEGATNREI AQRLYISPRT VEHHLRNIFR
QLQIRSRVEL ARLISGQ
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