| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1601 |
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| Symbol | |
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| ID | 3581088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 1844722 |
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| End bp | 1847634 |
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| Gene Length | 2913 bp |
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| Protein Length | 970 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637685295 |
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| Product | CRISPR-associated helicase Cas3 family protein protein |
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| Protein accession | YP_289659 |
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| Protein GI | 72162002 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0436721 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTTCG ATGACTCTGC GTCGCCGTGG CCGGGCAGAC TGTCTGCTGC AGCACGGTCC
GTGTGGGCCA AACACGACCG TGACACGGGT GACTGGTTAC CGCTGTGGCG GCACATGGCA
GACAGTGCCG CGGTTGCAGG CCGGCTGTGG GACGAATGGC TACCCCGCCA GGTGCGGCGC
CTGATCGCCG CGGCCCTGCC CGGCGGGGAA GACGACGCCC GGCGGCTAGC GGTGTGGCTG
GCCGCAACCC ACGACATTGG GAAAGCCACT CCGGCATTCG CCTGCCAGGT CGAGGAGCTG
GCTGCCGCCA TGCGCCGCAC CGGCCTGGAC ATGCCGCTGC ACAAGCAGAT GCCGGACCGT
AAGGACGCCC CCCATAACCT GGCCGGGCAG ATCCTGCTCC AGCAGTGGCT CATCGAACGG
CATGGTTGGC ACAAGCGCAA AACACTTCCG TGGACGATCG TCGCGGGCGG CCACCACGGG
GTGCCACCCA CGCACGATGA GCTGAGGAAG CTCGCCCAGT CCCGCGAACT GCTGTGTACC
TCCTCCTATG AAGACATGTG GCGCGGTGTC CAGACCGAAC TGCTCGACAC TGCTGCCGCG
GCCTGCGGGG TGACTGAGCG GCTGGGGGAG TGGCAGCACG TCGACCTGCC TCAACCAGTG
CAGGTACTCC TCACCGCGCT GGTCATTGTT GCCGACTGGA TAGCCAGCAA CGCCGACCTT
TTCCCCTACT TTCCCGACGG GGTCGCCACC GACCCTGAAC GCATCGACAC AGCCTGGAAG
CAACTGGACC TGCCACACCC TTGGCAGGCA GTGGAACCGG AAGAGGATCC CGCAACCCTG
TTCGCCACCC GCTTCGACTT GCCGAAAGGG GCACGGATCC GTCCCGTTCA GGAAGAAGCC
GTGCGACTGG CCCGCGCCCT CCCCGCCCCG GGAATGATGA TCATCGAAGC GCCGATGGGG
GAGGGGAAAA CGGAGGCGGC GCTCGCTGTC ACCGAGATCT TCGCTGCCCG CTCCGGAGCC
GGCGGATGCT TCATCGCCCT GCCAACCATG GCCACCGGGA ATGCCATGTT CCCGCGGATG
CTCCACTGGT TGAAGCGTCT CCCCAACAAA GCCGGTACGC ACTCGGTGTT CCTGGCACAC
TCCAAGGCTG CTCTCAACGA GGAGTACACC ACGCTGGCCC GCCAGGACAA TGGACGGATC
ACCGACGTCG ACCGCGACGG CACAGAAGGG GAATGGCAGC CCCGCAGCGA TGAACGAGTG
GCCCCCGCTC AACTCGTCGC TCACCACTGG CTGCGCGGCC GGAAGAAAGG AATGCTGTCC
TCGTTTGTGA CAGGCACCAT CGACCAGCTT CTCTTCACCG GACTGAAGAG CCGCCACCTG
GCGTTACGCC ACCTCGCGAT GGCCGGAAAA GTGGTTGTCG TCGACGAAGC CCACGCCTAC
GACACCTACA TGAACTCCTA CCTCGACCGG GTACTGTCCT GGCTGGGTGC CTACGGCGTG
CCAGTAGTGG TACTTTCCGC GACCCTGCCG GCTCGTCGCC GCCGCGAACT CCTCGAAGCC
TATGCCGGGG CCGCAAGTAT CGACAGCGGT TTCGCCGAGG TGGAGAAAGC AGACGGCTAC
CCACTGCTCA CCGCAGTCGC CCCGGGAACA GCCCCGCGTA TCGTGGCGCC AGCCGCCTCA
GGCCGCGGCA CCACCGTGTG GCTGGAACGC ATAGACGACG ACCTGGACAC ACTCGCGGAC
CGGTTGGAAG AAGAGCTCGC CGAGGGCGGC TGTGCCCTAG TCGTCCGCAA CACGGTCGAC
CGAGTCCACG AGGCCGCCGC CCACCTGCGC CAGCGTTTCG GGAACGACCA GGTGAGCGTC
GCCCACGCGC GTTTCGTGGA TGCGGACCGG GTCGAGAACG ACACGCGGCT ACTGGAAACC
TTCGGCTCCC CCGACAAAGT CGCGCAAGCG GGAGGCAGCC GCCCCACAAA ACACATTGTG
GTCGCCAGCC AGGTAGTGGA ACAGTCTTTA GACGTTGACT TCGACCTGCT GGTCAGCGAT
CTCGCACCAA TCGACCTGCT GTTGCAGCGG ATGGGCCGCC TGCACCGCCA CCAGCGCGGG
AAAGAGCAGT GCGAGCGTCC CCCGCGGCTG CGCGCCGCGC GCTGCCTGAT CACCGGGGTG
GACTGGACAA CCAGGGTCCC CCAACCAGTG AAAGGCTCTC GGACCATCTA CCGGGACTAT
CCACTGCTGC GCTCCCTGGC GGTCCTGGAA CCCTACCTCG CCGAGACTGC TGGGCAAGGA
CAAGCGATCC GCCTGCCGGA CGCTATCCAC CCGCTGGTGC AGGCAGCCTA CGGCTCCGAA
ACGGTCGGCC CCGCCGAATG GCAGGAAACC CTGGAAAAAG CCCGAATCGC CGACGACGCC
CACCAAGCCG ACCAGCGCGG CCGTGCCAGG GACTTCCTCC TCGGACCAGT GAAGAAACCC
GGACAACCCC TGACCGGATG GGTAAACGCC GGGTTGGGAG ACGCCGACGA CACTCGCCGC
GGTGCCGCCC AAGTCCGTGA CAGTCAGGAA ACCCTGGAAG TCCTCGTCGT GCAGCGGCGC
GCCGACGGTA CGCTCACCAC CCTGCCGTGG CTAGGCAAGA ACCGCGGCGG GTTGAAACTG
CCCACCGATG CTGCTCCTCC TGTCCGGCTT GCCCGCATCG TCGCTTCTTC AGCGCTGCGC
TTGCCCTACC AATTCAGTTC CACAGCCAAA GTTCTTGACC AAGTCATCGC CGAGCTTGAA
GCCAACTGCA TCCCGGCGTG GCAAACGAAA GAAGCGTATT GGCTGGCAGG CGAACTGATC
CTGTTTCTCG ACGAGAACTG TCGTAGCCAC CTGGCGGGCT ACGAACTCCG CTACACCCGT
GCCAACGGCC TTGAGGTCCA CCGTGACAAC TGA
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| Protein sequence | MAFDDSASPW PGRLSAAARS VWAKHDRDTG DWLPLWRHMA DSAAVAGRLW DEWLPRQVRR
LIAAALPGGE DDARRLAVWL AATHDIGKAT PAFACQVEEL AAAMRRTGLD MPLHKQMPDR
KDAPHNLAGQ ILLQQWLIER HGWHKRKTLP WTIVAGGHHG VPPTHDELRK LAQSRELLCT
SSYEDMWRGV QTELLDTAAA ACGVTERLGE WQHVDLPQPV QVLLTALVIV ADWIASNADL
FPYFPDGVAT DPERIDTAWK QLDLPHPWQA VEPEEDPATL FATRFDLPKG ARIRPVQEEA
VRLARALPAP GMMIIEAPMG EGKTEAALAV TEIFAARSGA GGCFIALPTM ATGNAMFPRM
LHWLKRLPNK AGTHSVFLAH SKAALNEEYT TLARQDNGRI TDVDRDGTEG EWQPRSDERV
APAQLVAHHW LRGRKKGMLS SFVTGTIDQL LFTGLKSRHL ALRHLAMAGK VVVVDEAHAY
DTYMNSYLDR VLSWLGAYGV PVVVLSATLP ARRRRELLEA YAGAASIDSG FAEVEKADGY
PLLTAVAPGT APRIVAPAAS GRGTTVWLER IDDDLDTLAD RLEEELAEGG CALVVRNTVD
RVHEAAAHLR QRFGNDQVSV AHARFVDADR VENDTRLLET FGSPDKVAQA GGSRPTKHIV
VASQVVEQSL DVDFDLLVSD LAPIDLLLQR MGRLHRHQRG KEQCERPPRL RAARCLITGV
DWTTRVPQPV KGSRTIYRDY PLLRSLAVLE PYLAETAGQG QAIRLPDAIH PLVQAAYGSE
TVGPAEWQET LEKARIADDA HQADQRGRAR DFLLGPVKKP GQPLTGWVNA GLGDADDTRR
GAAQVRDSQE TLEVLVVQRR ADGTLTTLPW LGKNRGGLKL PTDAAPPVRL ARIVASSALR
LPYQFSSTAK VLDQVIAELE ANCIPAWQTK EAYWLAGELI LFLDENCRSH LAGYELRYTR
ANGLEVHRDN
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