Gene Tfu_1596 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_1596 
Symbol 
ID3581639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand- 
Start bp1839830 
End bp1840453 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content62% 
IMG OID637685290 
ProductCRISPR-associated Cse3 family protein 
Protein accessionYP_289654 
Protein GI72161997 
COG category 
COG ID 
TIGRFAM ID[TIGR01907] CRISPR system CASCADE complex protein CasE/Cse3 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.00642378 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGCCG CCGTCATGAG CTCTTTCCCG ACCCTGCTGC CCAGCGACAC CGACGGCCCG 
CGTGTGCTGT GGCGAATCGA CCGCACCTCC AGGGCTGAAG TGTTCCTCTA CATCGTCAGC 
CCGCCCAAAC CTGACCTGAC CCACCTCGTG GAGCAGGCCG GGTGGCCAAC CCAACCCACG 
TGGGAAAGCT ACGACTACAC TCCGTTTCTG TCCCGCCTAG CAAAAGGAGA CGTGTGGGCG 
TTCCGGCTCA CTGCCAACCC TGTGCACAGC ATCCGCCGCA AAGCCGGGGA ACCCACTAAA 
CTCACCGCAC ACCTCACCCA GCGCTATCAA AAAAAGTGGC TGCTGCAGCG CCAAGACGCT 
GCGGGATTCC GGGTAGTGGA GAAACCTGCG GAAAAGCGTC GCCTTCCCGA AGGCGACGAA 
CACGAACTGA TCGTCCACAA CCGTCGCGAC TGGAACTTCT CTAAAGGAGC TCGAAAAGGC 
CGTCCGGTCT CTCTTGTCAC TGTGACCTTC GACGGTCGGC TCGAAGTCAC CGACCCCGAC 
GCCCTACGTC GCGCGCTCAT CTCGGGGATA GGTCGCGCCA AAGCCTACGG ATGCGGCCTG 
ATGACCCTGG CCCCAGTGGG CTGA
 
Protein sequence
MHAAVMSSFP TLLPSDTDGP RVLWRIDRTS RAEVFLYIVS PPKPDLTHLV EQAGWPTQPT 
WESYDYTPFL SRLAKGDVWA FRLTANPVHS IRRKAGEPTK LTAHLTQRYQ KKWLLQRQDA 
AGFRVVEKPA EKRRLPEGDE HELIVHNRRD WNFSKGARKG RPVSLVTVTF DGRLEVTDPD 
ALRRALISGI GRAKAYGCGL MTLAPVG