Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_1592 |
Symbol | |
ID | 3581635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 1833672 |
End bp | 1835321 |
Gene Length | 1650 bp |
Protein Length | 549 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637685287 |
Product | CRISPR-associated Cse1 family protein |
Protein accession | YP_289651 |
Protein GI | 72161994 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.440854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTGTCGG TTGCCCTGTG TTTTCTTGTG GGAGGAGCCA TTCCTTCACC GCCGTCATTT GATGTGACCA TCGCTCCTTG GCTGATTGCG CGCAGCCGCG ACGTCCTGGC CGCACCCGAA ATGCTGGGAC TGCGTGACGT TCTCATCCGC TCCCACGAAC TCTCCGACGT GGAGATTCCG CTTCCGCCTG GCGCGGCAGT ACTGTGGCGG ATACTCGCAC TGATCACCGC CCGCATCACC GGCCTCGACC AGCCGCCAAA CAAGAATCCG AAGCGGAAAT GGCAGGCTCG CCGCAGCCAG ATCCTCAGCA AAGGACGACT CGACCCGGAA GCGGTCGACG CCTACTTCGC CGACTACTCG GAGCGCTTCG ACCTGTTCCA CCCTGAGCGG CCCTGGTTGC AAGATCCTCG CCTGCGTGAA GAGTGTCCGA AAACCTCGGG TGTCAACAAG CTGGCATGGG GGCGCACCGC GGGAGAGAAC CAGGTGTGGC TCGGCGGCCA CCACCATGAC CTCGACCCGC ACCCCCTCGA CTCCGCTGAG GCTGTCTGGC ACCTGCTGGC AACTCTCGGC TACGGGCCTT CAGGGATGTG CACGGCTCGC GTTGTCCGGG GAAGAAGCGA ACGCAACGTC ACCGCGGGGC CGCTGCGCGG CACCGTCTCC TACCACCCGT TGGGCCGCAC CCTGTTCGAA AGCCTGATCC TCAACATTCC CTACCCCGGC ACTGGTGCAG CCGACCTCGC CTTCTGGGAA CAGCCAGAGC TCAACGACCC GCTCGGTCTT CCCGAAGAAT CCGCGGGACT CGCCGGGATT CTGAGGCTCG ACCACTTCCG CCATGCTGTC CTGCTGCACC CCTCGCCAGA TGGTTCACAC GTCGTGGATG CATGGGTGAC CTGGGCGTGG CGGGAACGCA ACATTTCGCC AGAACTCGAC CCTTACCTCA TCTACCAGAC AAGCAAGGAA GGCCGTGTCT ATCCGCGGCC AGCCGAAGCG GAACGGGCCA TATGGCGGGA CCTCGACGCC TTGCTGCACT ACGGCGAAGA CGGCAACTAC CGGCCGACAA TTTTGGACAA CTGCACGCCT TTGGCGCAGG TTCCCCAAGA AGTCCTGGAC TCCCTGCGGC TGCGCGCCTT CGGGTTCGAC CAGGACGGTC AGGCCCGTGA CAAACAGTGG TTCACCGCCA CCACCCCGGC CGTGCTGCGC TGGCTAGCAG ACCGGGAAAC CGACGACAAC GAGAACGCCC GAATCGTGCG TCGTATCACC CTGGCTCGCA AAGCCGCGGA AGCACTCGGC CGCCGCCTAG AAAAAGCGTG CAAAGAAGCG TGGAAGGAAA GCAACAGCCC TAGCTCCACT AGCTCCGGCA CCAACGCTAA GACCGAGACC GGTGTCGGAC CCTGGGTGCA GCACGGCATG AGCCGCTACT GGGCGAAAGC CGAGCCGGTC TTCTGGAACA TCGTCTACGA CCGGCCCGCT CAAGGCTACA CCCCCGGCAT GGCAGGCCCC GGAAACGCCT TCAACCTGGT CGCGTTAGCT GCCTACGACG AGGTGACCGG TCCCTACTGT GAACGGCCCC GCGTGGCCAA AGTCGTGGAG CGGCACCGCA GCACCCTGTT CAGCAACTGG ACACCGAAAC AGGACAAGGA AGCCGCGTGA
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Protein sequence | MLSVALCFLV GGAIPSPPSF DVTIAPWLIA RSRDVLAAPE MLGLRDVLIR SHELSDVEIP LPPGAAVLWR ILALITARIT GLDQPPNKNP KRKWQARRSQ ILSKGRLDPE AVDAYFADYS ERFDLFHPER PWLQDPRLRE ECPKTSGVNK LAWGRTAGEN QVWLGGHHHD LDPHPLDSAE AVWHLLATLG YGPSGMCTAR VVRGRSERNV TAGPLRGTVS YHPLGRTLFE SLILNIPYPG TGAADLAFWE QPELNDPLGL PEESAGLAGI LRLDHFRHAV LLHPSPDGSH VVDAWVTWAW RERNISPELD PYLIYQTSKE GRVYPRPAEA ERAIWRDLDA LLHYGEDGNY RPTILDNCTP LAQVPQEVLD SLRLRAFGFD QDGQARDKQW FTATTPAVLR WLADRETDDN ENARIVRRIT LARKAAEALG RRLEKACKEA WKESNSPSST SSGTNAKTET GVGPWVQHGM SRYWAKAEPV FWNIVYDRPA QGYTPGMAGP GNAFNLVALA AYDEVTGPYC ERPRVAKVVE RHRSTLFSNW TPKQDKEAA
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