| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1587 |
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| Symbol | |
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| ID | 3581630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 1829376 |
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| End bp | 1830374 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637685282 |
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| Product | CRISPR-associated Cas1 family protein |
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| Protein accession | YP_289646 |
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| Protein GI | 72161989 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
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| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03638] CRISPR-associated endonuclease Cas1, ECOLI subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.0375026 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATAACC CCCGTAAGGC GCTAGCCCGT CCGACACTGG CGATGCTGCC CCGGGTATCG
GACGGCCTCT CCTTCCTCTA CGTGGATGTC TGCCGAATAG TGCAGACCGA CACCGGCGTA
TGCGCGGAGG TCGAAACCGA AACCGGAAGA ATACATCGAG TCCCAATCCC CACCGCTTCA
CTCGCATGCG TCCTACTGGG ACCGGGAACC TCAATCACCA GTCCTGCCAT GGCGACTTTC
ATGCGCCACA ACACAACGGT CGTAACCTGC GGGGCGGGAG GCATCCTCAA CTACGGAAGC
TTTCCCGCCC CTAACCGCAC CACGAAATGG ATCGACCGGC AGGCACGCGC CTACTCCGAC
GACAGACGCC GACGAGACGT CGCCGTGCGG ATGTACGAGA TGCGCTTCGG AGAAGAACCT
CCTCCCGGTG CGTCCATCGA AAGGCTGCGC CAGCTTGAAG GGGCACGGAT GAAAGCCCTC
TACCGAAGCC TGGCGGCTAA GAACAGGGTG AAACCATTCA AACGGAACTA CAACCCGCAT
GACTGGGATG ACCAAGACCC TGTCAACAAG GCGCTTTCGG CAAGCAACGC TGCCCTTTAC
GGGGTGGTGC ACTCGGTACT GGCGCACCTG GGCTGCCACC CCGCGCTCGG GTTCATCCAC
TCCGGAAAAC AAGACGCGTT CGTCTACGAC ATCGCCGATC TCTATAAAGC ACGGACCACT
ATCCCGCTCG CGTTCTCCTT GAGCAGGACA GCCAACCCGG AGCAAGAAGC GCGCCTGCGG
CTTCGTCGAG ACCTAAAGCT GTACCGGCTG ATTCCGCAAA TTGTGCGGGA TGTGCAGACC
CTCCTCTCCT TAGACGACCC TGAGGAGGCC GTTTCGGAAG AGGAGCCGCC GAGCTCGGGA
GGGCCGTGGC AAGTCGTTGA CTTGTGGGAC CCGGTGGTCG GGGCTGTCTC CGGCGGTGTG
AACTATGCCA ATCACATCGC GGACAGCGAG GAGCCCTGA
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| Protein sequence | MDNPRKALAR PTLAMLPRVS DGLSFLYVDV CRIVQTDTGV CAEVETETGR IHRVPIPTAS
LACVLLGPGT SITSPAMATF MRHNTTVVTC GAGGILNYGS FPAPNRTTKW IDRQARAYSD
DRRRRDVAVR MYEMRFGEEP PPGASIERLR QLEGARMKAL YRSLAAKNRV KPFKRNYNPH
DWDDQDPVNK ALSASNAALY GVVHSVLAHL GCHPALGFIH SGKQDAFVYD IADLYKARTT
IPLAFSLSRT ANPEQEARLR LRRDLKLYRL IPQIVRDVQT LLSLDDPEEA VSEEEPPSSG
GPWQVVDLWD PVVGAVSGGV NYANHIADSE EP
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