| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1414 |
|---|
| Symbol | |
|---|
| ID | 3580965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 1638598 |
|---|
| End bp | 1640220 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637685111 |
|---|
| Product | FenI protein |
|---|
| Protein accession | YP_289475 |
|---|
| Protein GI | 72161818 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1649] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0039371 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGATGGT TGACCCGTGC CACTGCTGCC GTGATGCTGC TGTCTATGAC GGCCGCATGC
GGACCAGTCC CCGAGGGGGC CGTCCCCCGC GTGACTACTC CGACCACTGA AACAGGCGAC
GCCGCCGCAT CTCCCGCACC GAGTGCCGCG GCAGAGCTCA CGCCGATCCC CGAGGACTGC
GCAACAGACC CGGCCTATCC GAAACGGCAG ATGCGCGGCG TATGGCTCAC CACCGTCCGC
AACATCGACT GGCCTTCCGA GCCCGGGCTG AGCCCTCAAC AGCAGCAGGA GGAGCTCACC
GCTTTTCTGG ACCGCGCTGT CGAACTCGGG TTGAACGCGG TGTTCTTCCA CATTCGCCCC
ACAGCGGACG CGGTCTACGC CTCAGACAAG GAACCGTGGG CCCGCTACCT GACCGGCACC
CAGGGCGGCG ACCCCGGCTA CGATCCGCTG GAATTCGCGG TCGCAGAAGC CCACACACGC
GGCCTGGAAC TGCACGCCTG GTTCAACCCC TACCGGGTGG GGTGGCGGGA AGCCGACCTG
GAGCACCTTG CCGACGACCA TCCAGTGCGC CGCAACCCGG AGTGGATGAT CGTCTACGAC
GACCAGGGCT ACCTCGACCC CGGCAACCCC GAAGTCCGCG AATGGGTGGT CGACGTGGTC
GCGGATGTCG TGGAACGCTA CGACGTCGAC GGGGTGCATT TCGACGACTA CTTCTACCCG
TACCCTGCCT CAGGGGAGAC GTTCGACGAC GACGCCAGTT GGCAGGCCCA CGGCGACGGT
TTCCCCGACC GGGACGCGTG GCGGCGCGAC AACGTCAACC AGCTCATCCG GCAGGTGCAC
GAACGCGTCC ACGACATCAA ACCGTGGGTG CGGTTCGGGG TGAGCCCGTT CGGGATCTGG
CGCAACCGCA GCAGCGACCC TTCCGGGTCG GCCACCAGCG GCCTGCAGTC GTACGACGCG
CTGCACGCCG ACACCCGCAC GTGGATCCGC GAAGGCTGGA TCGACTACGT GGTCCCGCAA
CTGTACTGGC CGCAAGGGTT CGCCGCCGCT GACTACGCGG TCCTCGCGCC GTGGTGGGCC
GAGGAAGTGG CGGGCACGGG AGTGGACTTG TACATCGGCC AGGCCGCCTA CCGGGTGGGG
GAGGACGGCT GGAAAGGTGC GGACGCCCTC GCAAAACAGC TCGACTTCAA CACGCAGCAC
CCGGAGATCA CCGGCGACAT CTATTTTTCG ATGAAGGACC TCAACGGCCG GGCCCGCACA
GCCATAGAGC AGGTGGCTGC CAACCACTAT GCGCGCCCTG CGCTGCCCCC CGTCGCGAGC
GGCGCGTCAG GACAGCCCGC CCCGGTGCGC GACCTCGTCG CCGACACCGG TGAAGACGGG
GTGACCTTGC GGTGGGAAGG CGACGCAGAC CACCGGTGGT ACGCGGTCTA CCGGGTGCCC
GCAGACACGG ACGCGTGCGC CCTCGCCGAC GCCAAGCACC TGGTCGCGGT GCTCGGCGGC
GACCAGCACA CCTACCGCGA TCCGGCACCG GGAAATGAAG CAGTGCGCTA CCACGTGACA
GCGGTGGACG CGTTCCGCGT GGAAAGTGTC CCCTCCGCGG GGGTGGTCGT GAACCCGAGG
TGA
|
|---|
| Protein sequence | MGWLTRATAA VMLLSMTAAC GPVPEGAVPR VTTPTTETGD AAASPAPSAA AELTPIPEDC
ATDPAYPKRQ MRGVWLTTVR NIDWPSEPGL SPQQQQEELT AFLDRAVELG LNAVFFHIRP
TADAVYASDK EPWARYLTGT QGGDPGYDPL EFAVAEAHTR GLELHAWFNP YRVGWREADL
EHLADDHPVR RNPEWMIVYD DQGYLDPGNP EVREWVVDVV ADVVERYDVD GVHFDDYFYP
YPASGETFDD DASWQAHGDG FPDRDAWRRD NVNQLIRQVH ERVHDIKPWV RFGVSPFGIW
RNRSSDPSGS ATSGLQSYDA LHADTRTWIR EGWIDYVVPQ LYWPQGFAAA DYAVLAPWWA
EEVAGTGVDL YIGQAAYRVG EDGWKGADAL AKQLDFNTQH PEITGDIYFS MKDLNGRART
AIEQVAANHY ARPALPPVAS GASGQPAPVR DLVADTGEDG VTLRWEGDAD HRWYAVYRVP
ADTDACALAD AKHLVAVLGG DQHTYRDPAP GNEAVRYHVT AVDAFRVESV PSAGVVVNPR
|
|---|
| |