Gene Tfu_1233 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_1233 
Symbol 
ID3580996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp1435882 
End bp1437399 
Gene Length1518 bp 
Protein Length505 aa 
Translation table11 
GC content69% 
IMG OID637684929 
Productputative transmembrane efflux protein 
Protein accessionYP_289294 
Protein GI72161637 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCACCA CGCCGCACTC ACAGTCCACA CAAAGCGCCC CTGAGCAGGC CGGTCCGCAG 
CAGACGCCTC GTACCGGCAT CGCTCTCACC CTCATCGCGG CCACGCAGCT CATGCTCGTG
CTGGACGGCA CGATCATGAA CATTGCGCTG CCGAGCGTGC AGACCGCGCT CGACATCCCG
GCCGGGCGAC TGTCCTGGGT AGTCAACGCC TACGCCCTGA CCTTCGGCGG CCTCCTGCTG
CTCGGCGGGA GGATCGGTGA CCTTTGGGGG CGGCGGAGGG TCTTCCGTTT CTCGCTAGCC
CTCTTCGCTG CTGCCTCCCT TGCCGGCGGG CTTGCCACCC AGGAAACGGT TCTCATCGCC
GCCCGCGCCT GCCAGGGGGT CGCCGCCGCT ATTGCCGCGC CCACGGCCCT CTCCCTGATC
GCCACCACCT TTGCGGAAGG CCCCAGCCGC AACCGGGCCA TGGGCGTGTA CGGGGCGATG
TCCGGCCTCG GCTCGATCAT CGGCCTGCTG CTCGGCGGCC TCCTGACCGA ATTCCTCAAC
TGGCGCTGGG TGCTATTCGT CAACATCCCC ATCTGCCTGG CCGTCCTGGC CGGGACCGGA
GTCCTGGTGG AAGGCTCCCG GGTCCGGGGA CGGCTTGACC TTCCCGGCGC GCTCACCGGC
AGCCTCGGGC TTCTCGTCCT CGTCTACGCC ATCGTCCGCG GCGGGGATGC GGGCTGGTCC
GACCCGGTGA CCCTCGGCGC GGGCCTTGCC GCTCTGCTGC TCCTGTCCTG CTTCCTCGTC
ATCCAGTCGC GCAGCCCGCA CCCGATGATG CCCTTGGGTC TGCTCCGCGA CCGCAACCGG
GGAGCCGCCT ACGCCACGAT GCTGCTGGTG GGCGGCGGCA TGTTCGCCAC CTACTACTTC
CTCACGCTCT TCATGCAGCA GGTACAGGGC TGGGATGCGA TGACCACCGG CCTGGCGTAC
CTTCCCTTCG CGACCGGCAT GGGCGTGGCC TCGGGCATCC TCGGCCCCCG GCTGCTCGGC
CGGTTCTCCC CCCGCACCGT GATCGTGCCC GGCCTGGCTG CCGCCACCCT CGGCATGGTG
GTCTTCTCCC AGATCTCCCC CGGTTCCTCC TACCTGCTGC ACCTCATGCC GGCGATGGTC
CTCACCAGTG TCGGACTCGG ACTGAGCGTC GTCCCCCTCA CCTTGGGGGC GTTGAGCGGC
GTCGAGCCCG GCCAGTCGGG TATCGCCTCA GGTATCCTCA ACGCCGGCAT GCAGGTCGGC
GGGGCCCTCG GCCTAGCAGT GCTGAGCACC GTGGCCCTGA CCGGAACGCA CTCGCTCCTC
CCCGACGCCA CTGCTCTTCT CCAGCAGGGG CGACAGCAGG GAGAGATCGC TCTGGTCGTG
CAGGCGTCCG AGGCACTCAC CCACGGCTTC GGCTGGGCTT TCCTCGTCGG TGCCGGCCTT
TACGCCCTTG CCCTGCTCCT CGTCGCGTCC CTGATGACCA CACCAGGCCC CGCCGCCCGA
CCGGACAGAA AGGCCTGA
 
Protein sequence
MATTPHSQST QSAPEQAGPQ QTPRTGIALT LIAATQLMLV LDGTIMNIAL PSVQTALDIP 
AGRLSWVVNA YALTFGGLLL LGGRIGDLWG RRRVFRFSLA LFAAASLAGG LATQETVLIA
ARACQGVAAA IAAPTALSLI ATTFAEGPSR NRAMGVYGAM SGLGSIIGLL LGGLLTEFLN
WRWVLFVNIP ICLAVLAGTG VLVEGSRVRG RLDLPGALTG SLGLLVLVYA IVRGGDAGWS
DPVTLGAGLA ALLLLSCFLV IQSRSPHPMM PLGLLRDRNR GAAYATMLLV GGGMFATYYF
LTLFMQQVQG WDAMTTGLAY LPFATGMGVA SGILGPRLLG RFSPRTVIVP GLAAATLGMV
VFSQISPGSS YLLHLMPAMV LTSVGLGLSV VPLTLGALSG VEPGQSGIAS GILNAGMQVG
GALGLAVLST VALTGTHSLL PDATALLQQG RQQGEIALVV QASEALTHGF GWAFLVGAGL
YALALLLVAS LMTTPGPAAR PDRKA