Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_1233 |
Symbol | |
ID | 3580996 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 1435882 |
End bp | 1437399 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637684929 |
Product | putative transmembrane efflux protein |
Protein accession | YP_289294 |
Protein GI | 72161637 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCACCA CGCCGCACTC ACAGTCCACA CAAAGCGCCC CTGAGCAGGC CGGTCCGCAG CAGACGCCTC GTACCGGCAT CGCTCTCACC CTCATCGCGG CCACGCAGCT CATGCTCGTG CTGGACGGCA CGATCATGAA CATTGCGCTG CCGAGCGTGC AGACCGCGCT CGACATCCCG GCCGGGCGAC TGTCCTGGGT AGTCAACGCC TACGCCCTGA CCTTCGGCGG CCTCCTGCTG CTCGGCGGGA GGATCGGTGA CCTTTGGGGG CGGCGGAGGG TCTTCCGTTT CTCGCTAGCC CTCTTCGCTG CTGCCTCCCT TGCCGGCGGG CTTGCCACCC AGGAAACGGT TCTCATCGCC GCCCGCGCCT GCCAGGGGGT CGCCGCCGCT ATTGCCGCGC CCACGGCCCT CTCCCTGATC GCCACCACCT TTGCGGAAGG CCCCAGCCGC AACCGGGCCA TGGGCGTGTA CGGGGCGATG TCCGGCCTCG GCTCGATCAT CGGCCTGCTG CTCGGCGGCC TCCTGACCGA ATTCCTCAAC TGGCGCTGGG TGCTATTCGT CAACATCCCC ATCTGCCTGG CCGTCCTGGC CGGGACCGGA GTCCTGGTGG AAGGCTCCCG GGTCCGGGGA CGGCTTGACC TTCCCGGCGC GCTCACCGGC AGCCTCGGGC TTCTCGTCCT CGTCTACGCC ATCGTCCGCG GCGGGGATGC GGGCTGGTCC GACCCGGTGA CCCTCGGCGC GGGCCTTGCC GCTCTGCTGC TCCTGTCCTG CTTCCTCGTC ATCCAGTCGC GCAGCCCGCA CCCGATGATG CCCTTGGGTC TGCTCCGCGA CCGCAACCGG GGAGCCGCCT ACGCCACGAT GCTGCTGGTG GGCGGCGGCA TGTTCGCCAC CTACTACTTC CTCACGCTCT TCATGCAGCA GGTACAGGGC TGGGATGCGA TGACCACCGG CCTGGCGTAC CTTCCCTTCG CGACCGGCAT GGGCGTGGCC TCGGGCATCC TCGGCCCCCG GCTGCTCGGC CGGTTCTCCC CCCGCACCGT GATCGTGCCC GGCCTGGCTG CCGCCACCCT CGGCATGGTG GTCTTCTCCC AGATCTCCCC CGGTTCCTCC TACCTGCTGC ACCTCATGCC GGCGATGGTC CTCACCAGTG TCGGACTCGG ACTGAGCGTC GTCCCCCTCA CCTTGGGGGC GTTGAGCGGC GTCGAGCCCG GCCAGTCGGG TATCGCCTCA GGTATCCTCA ACGCCGGCAT GCAGGTCGGC GGGGCCCTCG GCCTAGCAGT GCTGAGCACC GTGGCCCTGA CCGGAACGCA CTCGCTCCTC CCCGACGCCA CTGCTCTTCT CCAGCAGGGG CGACAGCAGG GAGAGATCGC TCTGGTCGTG CAGGCGTCCG AGGCACTCAC CCACGGCTTC GGCTGGGCTT TCCTCGTCGG TGCCGGCCTT TACGCCCTTG CCCTGCTCCT CGTCGCGTCC CTGATGACCA CACCAGGCCC CGCCGCCCGA CCGGACAGAA AGGCCTGA
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Protein sequence | MATTPHSQST QSAPEQAGPQ QTPRTGIALT LIAATQLMLV LDGTIMNIAL PSVQTALDIP AGRLSWVVNA YALTFGGLLL LGGRIGDLWG RRRVFRFSLA LFAAASLAGG LATQETVLIA ARACQGVAAA IAAPTALSLI ATTFAEGPSR NRAMGVYGAM SGLGSIIGLL LGGLLTEFLN WRWVLFVNIP ICLAVLAGTG VLVEGSRVRG RLDLPGALTG SLGLLVLVYA IVRGGDAGWS DPVTLGAGLA ALLLLSCFLV IQSRSPHPMM PLGLLRDRNR GAAYATMLLV GGGMFATYYF LTLFMQQVQG WDAMTTGLAY LPFATGMGVA SGILGPRLLG RFSPRTVIVP GLAAATLGMV VFSQISPGSS YLLHLMPAMV LTSVGLGLSV VPLTLGALSG VEPGQSGIAS GILNAGMQVG GALGLAVLST VALTGTHSLL PDATALLQQG RQQGEIALVV QASEALTHGF GWAFLVGAGL YALALLLVAS LMTTPGPAAR PDRKA
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