| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1213 |
|---|
| Symbol | |
|---|
| ID | 3580704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 1414945 |
|---|
| End bp | 1415961 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637684909 |
|---|
| Product | xylanase |
|---|
| Protein accession | YP_289274 |
|---|
| Protein GI | 72161617 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.241286 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCATG CCCCCGCCAG TCTGAAGAGC CGGAGACGCT TCCGGCCCAG ACTGCTCATC
GGCAAGGCGT TCGCCGCGGC ACTCGTCGCG GTCGTCACGA TGATCCCCAG TACTGCCGCC
CACGCGGCCG TGACCTCCAA CGAGACCGGG TACCACGACG GGTACTTCTA CTCGTTCTGG
ACCGACGCGC CTGGAACGGT CTCCATGGAG CTGGGCCCTG GCGGAAACTA CAGCACCTCC
TGGCGGAACA CCGGGAACTT CGTCGCCGGT AAGGGATGGG CCACCGGTGG CCGCCGGACC
GTGACCTACT CCGCCAGCTT CAACCCGTCG GGTAACGCCT ACCTGACCCT CTACGGGTGG
ACGCGGAACC CGCTCGTGGA GTACTACATC GTCGAAAGCT GGGGCACCTA CCGGCCCACC
GGTACCTACA TGGGCACGGT GACCACCGAC GGTGGTACCT ACGACATCTA CAAGACCACG
CGGTACAACG CGCCCTCCAT CGAAGGCACC CGGACCTTCG ACCAGTACTG GAGCGTCCGC
CAGTCCAAGC GGACCAGCGG TACCATCACC GCGGGGAACC ACTTCGACGC GTGGGCCCGC
CACGGTATGC ACCTCGGAAC CCACGACTAC ATGATCATGG CGACCGAGGG CTACCAGAGC
AGCGGATCCT CCAACGTGAC GTTGGGCACC AGCGGCGGTG GCAACCCCGG TGGGGGCAAC
CCCCCCGGTG GCGGCAACCC CCCCGGTGGC GGTGGCTGCA CGGCGACGCT GTCCGCGGGC
CAGCAGTGGA ACGACCGCTA CAACCTCAAC GTCAACGTCA GCGGCTCCAA CAACTGGACC
GTGACCGTGA ACGTTCCGTG GCCGGCGAGG ATCATCGCCA CCTGGAACAT CCACGCCAGC
TACCCGGACT CCCAGACCTT GGTTGCCCGG CCTAACGGCA ACGGCAACAA CTGGGGCATG
ACGATCATGC ACAACGGCAA CTGGACGTGG CCCACGGTGT CCTGCAGCGC CAACTAG
|
|---|
| Protein sequence | MNHAPASLKS RRRFRPRLLI GKAFAAALVA VVTMIPSTAA HAAVTSNETG YHDGYFYSFW
TDAPGTVSME LGPGGNYSTS WRNTGNFVAG KGWATGGRRT VTYSASFNPS GNAYLTLYGW
TRNPLVEYYI VESWGTYRPT GTYMGTVTTD GGTYDIYKTT RYNAPSIEGT RTFDQYWSVR
QSKRTSGTIT AGNHFDAWAR HGMHLGTHDY MIMATEGYQS SGSSNVTLGT SGGGNPGGGN
PPGGGNPPGG GGCTATLSAG QQWNDRYNLN VNVSGSNNWT VTVNVPWPAR IIATWNIHAS
YPDSQTLVAR PNGNGNNWGM TIMHNGNWTW PTVSCSAN
|
|---|
| |