Gene Tfu_0506 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_0506 
Symbol 
ID3579917 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp572345 
End bp573418 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content70% 
IMG OID637684194 
Producthypothetical protein 
Protein accessionYP_288567 
Protein GI72160910 
COG category[T] Signal transduction mechanisms 
COG ID[COG3026] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.00681957 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCGGGG GCCGTGACAC GGCCGGTCCC CGATGGCGTG CACCGGCCAC GGCAGCTGTG 
CTGTGCCTGC TGCTGTGCCT GGTATCCGTC GCCGTTGTCG GCGACTCTGC CGACCGTCCC
GCGGGACGGC GCGGCGGGGA CGGCATGGCG GTCCTGCGGC GCGCCGCAGA GACCAGCGTC
CGCCTCTCCT ACCAGGGGGT CCGCGTGGTG TCCTGGGTCG ACAGCACGGG CCGCACGGAA
ACCGCCCGGC TGAACATCCT CCACCAGCCC GGCGTGGGCA CGCTGGTCAG TCCACTCCAC
GACACCGGGG AAGGCACCAA CCTGCTGGTC GGATCAACCC CCTGGGGCAG GGTGGGCAAA
GACGTGCTCG ACGTGCTGGA AACCAACTTC TGGGTCCGCA CCGAAGGGGA AACCCAGATT
GGGCAGCGCT CCGCCGTGGG TGTGGTCGCC CAACGGGACA ACGGGCAGGT CGCGGCCCGC
TTCTGGACCG ATGAGCACAC CGGGCTGCTG CTGCGTCGCG AAGTGTACGA CATCAGCGGG
GAAGTCGCGC AGACCAGCGT GTTCGAATCC ATCCAGTTCG GTGTGGACGC GGCCGCGCTT
GCCGAGGAGA CACGACAGCC CGACGTCGTC AGCCGACCCT GGGGCGACGA ACTCGACCCG
CAGGAACTCC GCCAGTTGCG AGACGAAGGC TGGGTGCTGC CGGAACGGCT GCTGTGGGGC
TTCGAACTGG TTGAGGCCCG CGCCACCGGC GAAGGAGACG AGCGGATCAC CCACCTGACC
TACTCCGACG GGATCAGCGT GATCTCCGTG TTCACCCAGC GCGGCAGCCT CGGCGGGGCA
GCGGTCACCG GGCTGCGCCG GACCGAAGAG GACGGCGCCC TCGTCCACGT CGCCGACGAA
GGCGGCCAGC ACCAGCGGAT CTGGGAAGCG GACGGGTTCG TGCACACGGT GCTCGCCGAC
GCGCCAGCGG GTCTCGTCGC CGACGTCCTC CACGCGCTGC CCCCGCCCGA CCGCCACGGT
TTCTGGGAGC GAGTCGGTCG AGGTTTCGAA CGCGTGGGAA CGTGGCTCGA CTAA
 
Protein sequence
MSGGRDTAGP RWRAPATAAV LCLLLCLVSV AVVGDSADRP AGRRGGDGMA VLRRAAETSV 
RLSYQGVRVV SWVDSTGRTE TARLNILHQP GVGTLVSPLH DTGEGTNLLV GSTPWGRVGK
DVLDVLETNF WVRTEGETQI GQRSAVGVVA QRDNGQVAAR FWTDEHTGLL LRREVYDISG
EVAQTSVFES IQFGVDAAAL AEETRQPDVV SRPWGDELDP QELRQLRDEG WVLPERLLWG
FELVEARATG EGDERITHLT YSDGISVISV FTQRGSLGGA AVTGLRRTEE DGALVHVADE
GGQHQRIWEA DGFVHTVLAD APAGLVADVL HALPPPDRHG FWERVGRGFE RVGTWLD