| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0275 |
|---|
| Symbol | |
|---|
| ID | 3579931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 306878 |
|---|
| End bp | 307651 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637683959 |
|---|
| Product | putative short chain dehydrogenase |
|---|
| Protein accession | YP_288336 |
|---|
| Protein GI | 72160679 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.599056 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGA ACGGAGTTGC CGCCCTCGTA TCCGGCGGCG CAAGCGGTCT GGGAGAAGCA
ACGGTCCGGG AGTTGACGGC GGCTGGAGCG ACCGTCGTCA TCGCGGACGT CAACACGGAA
CGCGGTGAGG CCCTGGCAAA GGAAGTCGGC GGTGTCTTCG TCCGCACCGA CGTCGCCGAC
GAGGACCAGG TGCAGGCGGC GGTCCAGGCC GCCGTGGACA CCGGGAAACC GCTTCGAGCA
GCGGTGTCTT GTGCGGGCAT CGCGTGGGCG GCCCGCACGG TGGCCCGGGA CGGTACACCG
CATGACCTCG CCTCCTTCCG CAAGATCATC GACGTCAACC TGATCGGCAC CTTCAACGTG
GTGCGGCTAG CCGCAGCAGC GATGGCGAAA ACCGAGCCGA TCAACGACGA CGGTGAGCGC
GGCGCGATCG TCAACACCGC CTCCGTGGCC GGGATCGAGG GGCAGATCGG CCAGATCGCC
TACTCCTCGT CCAAGGGCGG AATCATCGGG ATGACGGTTC CCGCCGCCCG CGACCTGGCC
GCGGTCGGGG TGCGCGTCAA CACGATCGCC CCCGGCATCC TTGATACGCC GATCTACGGC
CAGGGGCCGG AAGCCGAGGA GTTCAAGCAG CGGCTTGCTG CTCCGGTGCC TTTCCCCAAG
CGCCTGGGTA CCCCGGCGGA GTTCGCCCAG CTGGTCCGGG CACTGCTGGA GATCAGCTAC
ATCAACGCTG AAGTGGTGCG GATCGATGGC GGTCTGCGCA TGCAGCCGAA GTAG
|
|---|
| Protein sequence | MELNGVAALV SGGASGLGEA TVRELTAAGA TVVIADVNTE RGEALAKEVG GVFVRTDVAD
EDQVQAAVQA AVDTGKPLRA AVSCAGIAWA ARTVARDGTP HDLASFRKII DVNLIGTFNV
VRLAAAAMAK TEPINDDGER GAIVNTASVA GIEGQIGQIA YSSSKGGIIG MTVPAARDLA
AVGVRVNTIA PGILDTPIYG QGPEAEEFKQ RLAAPVPFPK RLGTPAEFAQ LVRALLEISY
INAEVVRIDG GLRMQPK
|
|---|
| |