Gene Tfu_0248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_0248 
Symbol 
ID3579846 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand+ 
Start bp277842 
End bp278507 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content67% 
IMG OID637683932 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_288309 
Protein GI72160652 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGACTATT CTGACCCTGC TGAGCTGCGT GAATCATATG ACGGAGCGCC GTTAGACCCC 
CGTGGCCTGG CACCGCAGCC GATGGACCAG TTCCACGCCT GGTTTACCGA GGCCTGCGAG 
GCGGAGCTGT CGGAGCCCAA CGCGATGGTG CTGTCTACGG TGGACCCCGA TGGTGCGCCG 
AGCGCCCGGA CCGTGCTCCT GAAAGGGTAT GACCGGCGTG GCCTGCGGTT TTTCACGAAC 
TACCGGTCGC GCAAAGGGGT GGCGCTCGCC CGCGAGCCGC GCGCTTGCGT CGTGTTCCCC 
TGGCATGCGA TCCGCCGCCA GGTCATCGTG TACGGCTTTG CTGAGCGGCT TAGTGACGAA 
GAGAACGACG CGTATTTTGC GCAGCGGCCG CACGGGTCCC AATTGGGGGC GTGGGCGAGT 
GAGTACCAGT CCGCGCCGGT AGCGGACCGT GCAGAGCTGG ACCGGGCGTA TGCGCGTTGC 
GCGGAGCAGT GGCCGCCGGG CACGCCGGTG CCTCGCCCGG AGTATTGGGG CGGGTTTCTC 
CTGGTCCCGC AGGAAGTGGA GTTTTGGCAG GGCCGTAGTG ACCGGATGCA CGACCGGTTC 
CGCTATCGGC TGGTCTCCGG CACGCCGAGT GAAGGGGCGT GGCAAATCGA CCGGCTTTCA 
CCATGA
 
Protein sequence
MDYSDPAELR ESYDGAPLDP RGLAPQPMDQ FHAWFTEACE AELSEPNAMV LSTVDPDGAP 
SARTVLLKGY DRRGLRFFTN YRSRKGVALA REPRACVVFP WHAIRRQVIV YGFAERLSDE 
ENDAYFAQRP HGSQLGAWAS EYQSAPVADR AELDRAYARC AEQWPPGTPV PRPEYWGGFL 
LVPQEVEFWQ GRSDRMHDRF RYRLVSGTPS EGAWQIDRLS P