| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0057 |
|---|
| Symbol | |
|---|
| ID | 3579054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 65942 |
|---|
| End bp | 67549 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637683738 |
|---|
| Product | putative regulatory protein |
|---|
| Protein accession | YP_288118 |
|---|
| Protein GI | 72160461 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2508] Regulator of polyketide synthase expression |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0293617 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCCC CGCACACCTC TTGTGCCGCA CCTGGACGAA GCAGCCACTT GTCTCCCGCA
CCTTTCCGTG ACGGCGTCTC CGACGCCCAA ACCGTGCCGC TCCGCACGAT CCTCGCCCGC
CGTGACCTCG CCTTGGAACC CCTTGTTCCC GCGGCCCCGG ACGCGCACGT TCGATGGGCC
ACAGTCAGCG AACTCCTCGA CCCCGCCCCC TACCTCAAAG GCGGGGAACT CCTCCTCACC
GCAGGGACCA ACCTGCCCAC CGACCCTGAA GCACTCGACC GGTACGTGAC CGCCCTCGTC
TCCGCACAGG TCACCGCGCT CGGCTTCGGC GTCACCCCCG TCCACGACGC AGTACCCGAC
ACGCTCGTGG CACGCTGCCG CGCCCACGGG CTCCCCCTCC TGCTCGTTCC ACGTGAAACA
CCGTTCGTCG CCGTCAGCCA AGCCGTCGGT GAAGAACTCG AACGGCTCCG CCTCGCCGGC
CAGCGCAGAT TCACCGCCGC GGGACGCTCC CTCACCAAAG CCGCAATCGG CGCCACCCCG
GTCCAAGAAC TCCTCACCAC GCTCAGCGCC GCACTCGGCT GCTGGACCCA GCTTCTCGGC
ACCCGCCCTC TCGGCCAAGT CGGACGCGTC CCCCCACTCC CCGACGAAGC CCACGAACTC
ATCCGCAAAG TCCGCACGCC AGGCGGCCCC CTCAGCGCCA AACTCTGGAT CCCCCCCGAC
GAAGTCGTCC TGCACGCCAT CGGCGACCAA GCCCGCGACC GGACCGTGCT CCTCCTCGGC
CGCCCCAAAC CCTTGGACAG CACCGACCGC GCCATCCTCG GCATCGCCGT CGCCCTACTC
GGCCTGCTCT CCCGCGCCCA ACCCGCCGTC GTCGACGACG CAAGCCGACT CGCCACCCGG
CTCCTCCTCA CCGGAGCCAC CCCCGACACG ACCGTCCTCC GGCTTCTGCC CGCCCTCCTC
ACCGGAGACG AACCAGCCCC CACCGCCTAC CGGGTCCTCC ACGCCCGCTG GACCCGCCCC
AGCTCCCAGC CCACCCCCTC CCCCACGCTG TTCCGCACCC GCCTCGTCGA CGACACCAGC
ACCCCCGTGC GCGCCATCCT CGCCGACCAA GGCACCCACC ACGCCCACCT GGAACTCCTC
GACAACCTGC ACGCCGCCGG ATGGCTCGCC GCACTCAGCC GCCCCGTGCC CGGCAGCGCA
CTCGCCGACG CCGACCAAGA AGCCGCGATG CTTCTCATCC GCGCCCACGC CACCGGCCGC
CCCCTCCTGC CCGAAACCCA GCCCGACCCC CTCGAAACCC TCCTCGAAAC CGACGAAGCC
CGCGCCGCAG CCCGCACCCT CCTCGGCCCG CTCGCCGGAA ACGACAGCAC CTCCCGCACC
CTGCGCACCA CCCTCCGCGC CTGGCTCGCC CACCACGGCA GCTGGGACCG GACCGCCGCC
GACCTCGGCG CCCACCGCAA CAGCGTCCGC TACCGCATCA GCCGCATCGA ACGCGACCTC
GGCATCGACC TGTCCGACCC GGAACAGCGA ATGCGCATGT GGTTTGCGCT GTCCCGATTC
CCCGACGACA CCCCCACCCA CCCGACACAA AGGGACATAT CACGATGA
|
|---|
| Protein sequence | MDAPHTSCAA PGRSSHLSPA PFRDGVSDAQ TVPLRTILAR RDLALEPLVP AAPDAHVRWA
TVSELLDPAP YLKGGELLLT AGTNLPTDPE ALDRYVTALV SAQVTALGFG VTPVHDAVPD
TLVARCRAHG LPLLLVPRET PFVAVSQAVG EELERLRLAG QRRFTAAGRS LTKAAIGATP
VQELLTTLSA ALGCWTQLLG TRPLGQVGRV PPLPDEAHEL IRKVRTPGGP LSAKLWIPPD
EVVLHAIGDQ ARDRTVLLLG RPKPLDSTDR AILGIAVALL GLLSRAQPAV VDDASRLATR
LLLTGATPDT TVLRLLPALL TGDEPAPTAY RVLHARWTRP SSQPTPSPTL FRTRLVDDTS
TPVRAILADQ GTHHAHLELL DNLHAAGWLA ALSRPVPGSA LADADQEAAM LLIRAHATGR
PLLPETQPDP LETLLETDEA RAAARTLLGP LAGNDSTSRT LRTTLRAWLA HHGSWDRTAA
DLGAHRNSVR YRISRIERDL GIDLSDPEQR MRMWFALSRF PDDTPTHPTQ RDISR
|
|---|
| |