| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0047 |
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| Symbol | dnaE |
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| ID | 3579042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 49207 |
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| End bp | 52773 |
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| Gene Length | 3567 bp |
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| Protein Length | 1188 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637683727 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_288108 |
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| Protein GI | 72160451 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.55181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACGAACG ATCCCTTCGT CCACCTTCAC GTCCACACCG AGTATTCGAT GCTGGACGGT
GCCGCCAAGC TCAAGCCGCT GTTCGAGGAA GCTGCCCGGT TGGGCATGCC TGCCGTGGCG
ATGACGGACC ACGGAAACAT GTTCGGGTCT TACGAGTTCT GGCAGACCTC CAAGGAGTCG
GGGGTCAAGC CGATCATCGG GATCGAGGCG TATGTGGCGC CCGAGTCCCG CTTCCACAAG
CAGCGTGTGT TCTGGGGGAC GGGAAAGACC GGCGACGAGG CTGCTGAGGG TGGCAAGGAC
GTTTCTGGCG GCGGCCGCTA CCTGCACTTG ACCATGTGGG CGCGGAACGC GAAAGGGCTG
CGCAACCTGT TCCGGTTGTC GTCGCTCGCG TCTTTCGAGG GCTACTACAC CAAACCGCGC
ATGGACTTGG AGCTGATGGC CCAGTACAGC GAGGGCATCA TGGTCACCAC CGGGTGCCCG
TCGGGTGGGG TGCAGACCCG GCTGCGGCTC GGCCAGGAGC GGGAGGCTAT CGAATACGCG
GGCAAGCTCC GGGATATTTT CGGTCGCGAC TCCGTGTTCG TGGAGTTGAT GGACCACGGT
CTGGATATTG AGCGGGAAGT CCGCTCCGGC TTGTTGACTG TGGCGAAGAA GCTCGGCCTG
CGGCCCGTGG TCACCAACGA CTCCCACTAT GTGACCGAGG ACCAGGCGGC CGCGCATGAC
GCGCTGCTGG CCGTGGGTGT GGGCAAGAAC CTCGACGACC CTACGCGTTT CCGGTTCAAC
GGCACCGGCT ACTACCTCAA AAGCGCAGAA GAGATGCGGT CCCTCAACAC GTTCGACGAA
TGGTTGGAGG GGTGCCGCAA CACGCTGTGG ATCGCCGAGC AGGTGGAGGA CGGCGCATAC
GACGACGTGT TCCGCCCCCG GGACTTGATG CCGAAGTTCC CGGTGCCGGA AGGGGAGACG
CAGGCGAGCT GGCTGCGCAA GGAGATTGAA CGCTGCATCC CGAACCGGTA CCCCAACGGG
CCGAGCCGGG AAGTGCGGGA ACGTATCGAA CACGAGTTGA GCATCATCGA GCGGATGGGG
TTCCCCGCCT ACTTCCTGGT GGTGGCGGAC ATCTGCCAGT ACGCGCGGCG TTCGGGGATC
GCGCTGGGGC CGGGGCGTGG TTCGGCGACC GGGTCGATGG TGGCCTACGT GCTCGGGATC
ACCGACTTGG ACCCGTTGGA GCACTCGCTG CTGTTTGAAC GGTTCCTCAA CCCCGAGCGT
GTGTCGATGC CTGACATCGA CTTGGACTTC GACGAACGTA AGCGCGGCGA CATGATCCGC
TACGTGACGG AACGCTACGG GGAGGACCGG GTCGCGCAGA TCCTCACGTT CGGCACGATT
AAGGCGAAGG CTGCGATCAA GGACGCGACG CGGATCCTCG GCTACCCGTA CGCGCTCGGT
GACAAGATCA CGAAGGCGTT CCCGCCGGCG GTGGGTGGTA AAGAGATTCC GCTGTCCGCG
GTCTTCGACG AAAGCCACCC CCGCTACAAC GAGGCGGCTG AGCTGCGGCA GCTCATCGAA
TCCAACCCGG ACGTCCGCAA GGTGTATGAG ACTGCAAGCG GTCTGGAAGG GCTGACCCGG
GGCACGGGTG TGCACGCGGC GGGTGTGATC CTCTCCGCTG AGCCGCTGCT CGATGTGATC
CCGCTGCACA AGCGGGAGAC GGACGGGGCC ATCATCACAG GCTTCCCCTA TCCCCAGTGC
GAGGAGATGG GCCTGTTGAA GATGGACTTC CTGGGGTTGC GGAACCTGAC GGTCATCGAC
GACGCGATCC AGAACATCAA GGCCAACGAG GGCAAGGAGA TCAACCTGTC CGCCCTGCCG
TTGGACAACA AGAAGACGTA TGAGCTGCTG TCGCGCGGGG ACACGCTCGG CGTGTTCCAG
CTCGACGGTG GTCCGATGCG GGCGCTGCTC AAGCGGATGG AGCCGAAGAA GTTCGGTGAC
ATTGCCGCTG TGCTCGCCCT GTACCGGCCT GGTCCGATGG CGGCGAACGC GCACAACGAC
TATGCGGACC GGTCGAACGG GCGCCAGGAG ATCACTCCGA TCCACCCGGA GCTGAAGGAG
GCGTTGGACC CGATCCTCGC CGAGTCTTTC CACCTGATCG TCTACCAGGA GCAGGTGATG
GCGATCGCCC AGCAGCTCGC CGGGTACACG CTGGGCGGCG CGGACTTGTT GCGCCGCGCG
ATGGGGAAGA AGAAGAAGGA GGCCCTGGAG AAGGAGTACA CCAAGTTCTC CGAAGGCATG
CTGTCCCGGG GCTTCTCCAA GGAGGCCATG CAGGCCTTGT GGGACGTGAT GCTTCCCTTC
TCCGGCTACG CGTTCAACAA GTCGCACACG GCCGGGTACG GGATGATTTC TTATTGGACC
GCCTATTTGA AGGCGAATCA CCCGGCGTCC TACATGGCGG CTCTGCTCAC GTCGGTGGCG
GACGACAAGG ACAAGATGGC TGTCTATCTG GCGGAGTGCC GGAAGATGGG CATCCGGGTG
CTGCCGCCGG ACGTCAACGA GTCGGGTCTG CAGTTCACCC CGGTCGGCAA CGACATCCGT
TTCGGGTTGG GCGCGGTCCG CAACGTGGGC GCCAACGTGG TGGAGTCGAT CCTCAAGACC
CGTGAGGAGA AGGGGAAGTT CACGTCGTTT GTAGACTTCC TGTCGAAGAT TGAGCTGACG
GTCTGCAACA AGCGGGTCAT CGAGTCGCTG ATCAAGGCGG GGGCGTTCGA CTCGCTCGGC
CACTCTCGCC TGGACTTGTA CCGGCACCAC GAGGCCGCGG TGGATGCGGT GCTCAGTTCG
AAGAAGCAGG AGGCGCACGG CCAGTTCGAC CTGTTCGGCG GGGGTGACGA GGAGGACGGC
GGGGAGAGCG CGCCGCTGGG CTTCTCCATC AACTGGACGG GTGAGGAGTG GGACCGGAAG
ACCAAGCTCG CGTTTGAGCG GGAGATGCTC GGCTTGTACG TGTCCAGCCA TCCTTTGGCG
GGGGCCGAGC GGATTCTGGC GCGGGCTAGT GACGCCCCGC TGCTGGACGT GGTGAACGGG
GAGCGCCGCA ACAACGACGA GGTGCGGATT GCGGGCTTGA TCTCCAAGGT GGAGAAGCGC
ATCAACAAGG CGGGCAACCA GTGGGCGATC GCCACGGTCG AGGATTTGGA CGCTTCTATT
GAGGCTTTGT TCTTCCCCAA GGTGTATCCG CTGTATGTGG ACGCTTTGGT GGAGGACACC
GCGGTGTCGA TCAAGGGGCG GCTCAACGAC CGGGACGGCA CCTTCTCCCT CTTCGTGTCC
GAGATGTCGA TTTTGGACAT TTCCCATGTG TCTGAGGGGG AGCCGCCGGT TCTGTTGACT
ATTCCGGAGA AGAGGGTCAC CCGGGAGTTG ATCAGCGAGC TGAAGCAGAC GCTGCGCAGC
CACCGGGGGG ACACGCCGGT GCGGATCCGG GTGGACAACC CGCGGCGGTC GCGGATTTTC
GCGATCGACG ACTATCCGGT GCGGGTCAGC CCGGAGTTTT CGGGTGAGGT GAAGAGCCTG
CTGGGACCGG AGTCGATCAC CTACTGA
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| Protein sequence | MTNDPFVHLH VHTEYSMLDG AAKLKPLFEE AARLGMPAVA MTDHGNMFGS YEFWQTSKES
GVKPIIGIEA YVAPESRFHK QRVFWGTGKT GDEAAEGGKD VSGGGRYLHL TMWARNAKGL
RNLFRLSSLA SFEGYYTKPR MDLELMAQYS EGIMVTTGCP SGGVQTRLRL GQEREAIEYA
GKLRDIFGRD SVFVELMDHG LDIEREVRSG LLTVAKKLGL RPVVTNDSHY VTEDQAAAHD
ALLAVGVGKN LDDPTRFRFN GTGYYLKSAE EMRSLNTFDE WLEGCRNTLW IAEQVEDGAY
DDVFRPRDLM PKFPVPEGET QASWLRKEIE RCIPNRYPNG PSREVRERIE HELSIIERMG
FPAYFLVVAD ICQYARRSGI ALGPGRGSAT GSMVAYVLGI TDLDPLEHSL LFERFLNPER
VSMPDIDLDF DERKRGDMIR YVTERYGEDR VAQILTFGTI KAKAAIKDAT RILGYPYALG
DKITKAFPPA VGGKEIPLSA VFDESHPRYN EAAELRQLIE SNPDVRKVYE TASGLEGLTR
GTGVHAAGVI LSAEPLLDVI PLHKRETDGA IITGFPYPQC EEMGLLKMDF LGLRNLTVID
DAIQNIKANE GKEINLSALP LDNKKTYELL SRGDTLGVFQ LDGGPMRALL KRMEPKKFGD
IAAVLALYRP GPMAANAHND YADRSNGRQE ITPIHPELKE ALDPILAESF HLIVYQEQVM
AIAQQLAGYT LGGADLLRRA MGKKKKEALE KEYTKFSEGM LSRGFSKEAM QALWDVMLPF
SGYAFNKSHT AGYGMISYWT AYLKANHPAS YMAALLTSVA DDKDKMAVYL AECRKMGIRV
LPPDVNESGL QFTPVGNDIR FGLGAVRNVG ANVVESILKT REEKGKFTSF VDFLSKIELT
VCNKRVIESL IKAGAFDSLG HSRLDLYRHH EAAVDAVLSS KKQEAHGQFD LFGGGDEEDG
GESAPLGFSI NWTGEEWDRK TKLAFEREML GLYVSSHPLA GAERILARAS DAPLLDVVNG
ERRNNDEVRI AGLISKVEKR INKAGNQWAI ATVEDLDASI EALFFPKVYP LYVDALVEDT
AVSIKGRLND RDGTFSLFVS EMSILDISHV SEGEPPVLLT IPEKRVTREL ISELKQTLRS
HRGDTPVRIR VDNPRRSRIF AIDDYPVRVS PEFSGEVKSL LGPESITY
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