Gene Tfu_0006 details

Gene Information

• Locus tag: Tfu_0006
• Symbol: gyrB
• ID: 3579767
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermobifida fusca YX
• Kingdom: Bacteria
• Replicon accession: NC_007333
• Strand: +
• Start bp: 6950
• End bp: 8935
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637683686
• Product: DNA gyrase subunit B
• Protein accession: YP_288069
• Protein GI: 72160412
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01059] DNA gyrase, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.60604
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTCATGCG GATGGTCGGC GTCCCCGGGC AGGAGGGTGT TTCCAACTTT GGCCTACGAC 
GCGCGTTCAA TCACGGTTCT GGAAGGCCTC GAAGCGGTAC GCAAACGCCC CGGTATGTAC 
ATCGGATCCA CGGGCGAGCG CGGACTGCAC CACCTTGTCC AAGAGGTTGT GGACAACTCT 
GTGGACGAGG CGCTCGCCGG ATACGCGACC GCTATCGAGG TCACATTGCT CGCTGACGGC 
GGGGTCCGGG TCACCGACAA CGGACGGGGT ATCCCGGTCG ACCCGCACCC AGTAGAAAAG 
AAGCCCGCAG TAGAGCTTGT CCTCACCACC CTGCACGCGG GTGGCAAATT CGACAGCAAG 
TCCTACGCGG TCTCCGGCGG CCTGCACGGC GTCGGCGTCT CCGTCGTCAA CGCCTTGTCC 
ACCCGGCTCG AAGTCGAAGT CCGCCGGGAC GGCTACCTGT GGACCCAGAG CTACGAGATG 
ACCAAACCGG TCACCGAGCT CATCAGGCGG GAGCCCACCG ACGAGACCGG CACCCAGATC 
ACGTTCTGGC CGGACGGCTC CATCTTCGAA ACCACCACCT TCAACTTCGA GACGCTCTCC 
CGGCGGCTCC AGGAGATGGC GTTCCTCAAC AAGGGACTGT CCATCACCAT CCGAGACGAG 
CGTCCCGAAT TCGTCGGCGA CTCCCCGGTC ACCCAGACCT ACTACTACGA AGGCGGGCTG 
TCGGACTTCG TCCGCCACCT CAACGCCACC AAGGAGCCCG TCCACTCCTC CATCATCGCG 
TTCGAAGAAG CCGGCGACGG GATCGCCGTC GAGATCGCGA TGCAGTGGAA CCAGTCCTAC 
ACCTCCTCGG TGCACACCTT CGCCAACACC ATCAACACGG CTGAAGGCGG CACCCACGAA 
GAGGGCTTCC GCGCCGCACT CACCTCCATC GTCAACCGGT ACGCCCGCGA CCAGAAACTG 
CTGCGGGACA AGGACGAGAA CCTCACCGGC GACGACATCC GGGAAGGCCT CACCGCCATC 
GTCTCGGTGA AACTCGCCGA CCCCCAGTTC GAAGGCCAGA CCAAAACCAA ACTCGGCAAC 
ACCGAAGCCA AGTCCTTCGT CCAAAAGGTC TGCCACGAAT ACCTGCGGGA CTGGCTCGAC 
CGCAACCCGG GAGAAGCCAA AGACATCGTC ACCAAGGCGA CCCAGGCCGC CCGCGCCCGG 
ATCGCCGCCC GCCAAGCCCG GGAACTCACC CGGCGCAAGA CCCTGCTGGA GTCCACCTCA 
CTGCCCGGCA AGCTCGCAGA CTGCCAGTCC ACCGACCCGG AACGCTGCGA GGTCTACATC 
GTCGAGGGAG ACTCCGCCGG CGGCTCCGCC AAAGGCGGGC GTGACCCCTA CTACCAGGCG 
ATCCTCCCCA TCCGCGGCAA GATCCTCAAC GTCGAGAAAG CCCGCATCGA CCGGATCCTC 
AAAAACAACG AGGTCCAGGC GATCATCACC GCGCTGGGCA CGGGGATCCA CGACGACTTC 
GACATCACCA AGCTGCGGTA CCACAAGATC ATCCTCATGG CCGACGCCGA CGTCGACGGC 
CAGCACATCC GCACGCTGCT GCTCACCCTG CTGTTCCGCT TCATGAAACC GCTCATCGAA 
GCCGGACACG TCTACCTCGC GCAGCCCCCG CTCTACAAGA TCAAGTGGGA CCCCCGCGGA 
ACCGACGTCG ACTACGCCTA CTCCGACCGC GAACGCGACG AGAAGATCGC CGCCGGTATC 
GCAGCGGGCA AGAAGGACCC CCGGCCCCGC GACCTCGTCC AGCGCTTCAA AGGCCTGGGA 
GAGATGAACC CCAGCGAACT GTGGGAAACC ACCATGGACC CCGAACGGCG GGTGCTGCTG 
CAAGTGACGC TGGACGACGC AGCCCAGGCA GACGAAATGT TCAGCGTGCT CATGGGGGAA 
GACGTCGAAT CCCGACGCGC CTTCATCCAG CGCAACGCCC GGGACGTCCG TTTCCTGGAC 
ATCTAG 

 

Protein sequence

MSCGWSASPG RRVFPTLAYD ARSITVLEGL EAVRKRPGMY IGSTGERGLH HLVQEVVDNS 
VDEALAGYAT AIEVTLLADG GVRVTDNGRG IPVDPHPVEK KPAVELVLTT LHAGGKFDSK 
SYAVSGGLHG VGVSVVNALS TRLEVEVRRD GYLWTQSYEM TKPVTELIRR EPTDETGTQI 
TFWPDGSIFE TTTFNFETLS RRLQEMAFLN KGLSITIRDE RPEFVGDSPV TQTYYYEGGL 
SDFVRHLNAT KEPVHSSIIA FEEAGDGIAV EIAMQWNQSY TSSVHTFANT INTAEGGTHE 
EGFRAALTSI VNRYARDQKL LRDKDENLTG DDIREGLTAI VSVKLADPQF EGQTKTKLGN 
TEAKSFVQKV CHEYLRDWLD RNPGEAKDIV TKATQAARAR IAARQARELT RRKTLLESTS 
LPGKLADCQS TDPERCEVYI VEGDSAGGSA KGGRDPYYQA ILPIRGKILN VEKARIDRIL 
KNNEVQAIIT ALGTGIHDDF DITKLRYHKI ILMADADVDG QHIRTLLLTL LFRFMKPLIE 
AGHVYLAQPP LYKIKWDPRG TDVDYAYSDR ERDEKIAAGI AAGKKDPRPR DLVQRFKGLG 
EMNPSELWET TMDPERRVLL QVTLDDAAQA DEMFSVLMGE DVESRRAFIQ RNARDVRFLD 
I