Gene Tfu_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_0004 
SymbolrecF 
ID3579765 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp4988 
End bp6121 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content69% 
IMG OID637683684 
Productrecombination protein F 
Protein accessionYP_288067 
Protein GI72160410 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0533102 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGTCT CCCACCTTCA GTTGGCCGAC TACCGGTCCT ACGAGGCCGC GTACCTGGAG 
CTGGAGCCGG GAGTCAGCAC CTTCATAGGC CCGAACGGGC AGGGCAAGAC CAACCTGGTC
GAAGCGATCG GCTACGTCGC CACCCATAGC AGCCACCGCG TGGCCCACGA CGCTCCCCTC
GTCCGCCGAG GAGCCCAACG AGCCGTCATC CGCGCGGCCG TGGTCCGCCA CGGCCAAACT
GCCCTCATCG AGCTGGAGAT CAACCCTGGG CGGGCCAACC GCGCCCGCCT GAACCGCTCC
CCCAACACCC GGATGCGCGA CGTCCTCGGC ATCCTCCACA CCGTCCTGTT CGCCCCCGAA
GACCTGGCCC TGGTCAAAGG AGACCCGGGG GAGCGCCGCC GCTTCCTCGA CGAGCTGCTG
ACCGCCCGCG CCCCCCGGTA CGCGGGGGTG CGCTCCGACT ACGAACGCGT CCTCAAACAG
CGCAACGCGC TCCTCAAATC CGCAGCCGCC CAAAACCTCC ACCACCGGGG CGGCCGCGAC
CTGCCCACGC TGGACGTGTG GGACGAGCAC CTCGCCCAGA TCGGCGCGGA ACTCCTCGCG
GCACGGCTCG CCCTGGTTGC GGAACTCCAG CCCTTGGCCG CGAAAGCCTA CGGCGAACTC
ACCGCCACCC AAGACCCGAT CAGCCTGCGC TACCGCTGCT CGGCCACTGA CGAGGAGCTC
GACACCACCA ACCGTCCACA GCTTGTGGAA ATCCTGCGCG CTGCACTGCT GCGCGCCCGC
CCCGACGAAC TGCGGCGCGG TGTCAGCCTC GTCGGCCCCC ACCGCGACGA CCTGCAGCTG
TGGCTCAACG ACCTGCCAGC CAAGGGCTAT GCCAGCCAAG GCGAATCCTG GTCGTACGCC
CTCGCGCTGC GGCTCGCCGG CTTCGAACTG CTCCGCGCCG ACGGCGACGA CCCCGTCCTC
CTCCTCGACG ACGTTTTCGC GGAACTCGAC GCTGAGCGGC GGCGCCGCCT CGCCTCTTAC
GTCCGCACCG CGGAACAAGT CCTCGTCACC GCTGCCGTAC CCGACGATGT CCCCCAAGAA
CTCTCCGGGG CACGATTCCG GGTCACAGGA GGGAGCGTGG AACGTGAACG GTGA
 
Protein sequence
MHVSHLQLAD YRSYEAAYLE LEPGVSTFIG PNGQGKTNLV EAIGYVATHS SHRVAHDAPL 
VRRGAQRAVI RAAVVRHGQT ALIELEINPG RANRARLNRS PNTRMRDVLG ILHTVLFAPE
DLALVKGDPG ERRRFLDELL TARAPRYAGV RSDYERVLKQ RNALLKSAAA QNLHHRGGRD
LPTLDVWDEH LAQIGAELLA ARLALVAELQ PLAAKAYGEL TATQDPISLR YRCSATDEEL
DTTNRPQLVE ILRAALLRAR PDELRRGVSL VGPHRDDLQL WLNDLPAKGY ASQGESWSYA
LALRLAGFEL LRADGDDPVL LLDDVFAELD AERRRRLASY VRTAEQVLVT AAVPDDVPQE
LSGARFRVTG GSVERER