| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_4200 |
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| Symbol | trmE |
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| ID | 3566529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 4497271 |
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| End bp | 4498617 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637682672 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_287396 |
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| Protein GI | 71909809 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 53 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0153583 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAATCCG ACACCATTGC TGCCATCGCT ACGGCCCCAG GCCGTGGCGG TGTCGGCGTG
ATCCGCATCT CGGGCAGCAA TTTGCTGCCC TTTGCTTTTG CGCTGACCGA AAAGACACCG
AAGCCGCGCT ATGCCTCGCT GGCAGACTTC AAGGCAGCCG ATGGCAGCAC CATCGATACC
GGCCTGCTGC TCTATTTCCC GAATCCGCAA TCCTTCACTG GCGAGGATGT GCTCGAACTG
CAGGGCCACG GCGGCCCGGT GGTCATGCAG ATGCTGCTTG CCCGATGCCT GGATCTTGGG
GCCAGACTGG CCGAACCCGG TGAATTCAGC CGCCGCGCCT TTCTGAATGG CAAGATGGAT
CTGGCCCAGG CGGAAGCCGT CGCCGACCTG ATCGACGCGG CAACCGCCAG CGCGGCCCGT
TCAGCCGTCC GTTCGTTGCA GGGCGAGTTC TCGCGGGCGA TTGGCGAACT CAATGATGAA
TTGATCAACC TGCGCATGTT GGTCGAGGCC ACGCTGGATT TCCCGGAAGA GGACATCGAC
TTTCTGAAAG CCGCCAACGC TTTTGGCCGT CTGGAACGCC TGCAATTGAA ATTGGCCGAG
ATTTTCGACC GGGCCGGGCA AGGCAAACTG CTGCAATCCG GCCTTCATGT CGTGCTGGCT
GGGCAACCGA ACGTCGGCAA ATCCTCCCTG CTCAACCGGC TGGCTGGAGA TGATCTGGCC
ATCGTCACAC CGATTGCTGG CACGACCCGC GATGCCCTGC GCTCGACCAT CCAGATCGAG
GGCATACCGC TACACATCAT CGATACTGCT GGCTTGCGCG AGACCGATGA CGAGGTTGAA
AAAATTGGCA TCGAGCGTAG CTGGAAGGAG ATTGAACGCT CCGATGTTGT CCTGTTGCTG
GTCGATGCCA GAACCGGTGT CAGCGAATCC GACCGGGAAA TTCTGGCCCG TTTGCCGGAT
CGTCTGCAAA GGATCACCGT TTATAACAAG ATTGATCTTA CTCACCGGGC CGCCGAGCGC
CATGATGAGG CTAACGGCAC CGCCATTTCA CTCTCTGCCA AGGCCAATCA GGGCATAGAA
CTATTACGCC AGGAATTACT GCGCATTGCC GGCTGGCACC AGGCTGAAGA TGTTTTCATT
GCCCGAGAAC GTCATTTGAG GGCCCTATCT GCGGCTCAGG AGCATGTCGC AGCAGCCCGA
AACGTCGTTG AAGGTGCTTT GCCAGCACTC GAACTATTTG CCGAAGAACT ACGGCTTGCC
CAGCAGTCTC TGGGTGAAAT CACCGGTGAA TTCACGGCTG ATGACCTTCT AGGTGTGATT
TTCAGCCGAT TCTGCATCGG AAAATAG
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| Protein sequence | MKSDTIAAIA TAPGRGGVGV IRISGSNLLP FAFALTEKTP KPRYASLADF KAADGSTIDT
GLLLYFPNPQ SFTGEDVLEL QGHGGPVVMQ MLLARCLDLG ARLAEPGEFS RRAFLNGKMD
LAQAEAVADL IDAATASAAR SAVRSLQGEF SRAIGELNDE LINLRMLVEA TLDFPEEDID
FLKAANAFGR LERLQLKLAE IFDRAGQGKL LQSGLHVVLA GQPNVGKSSL LNRLAGDDLA
IVTPIAGTTR DALRSTIQIE GIPLHIIDTA GLRETDDEVE KIGIERSWKE IERSDVVLLL
VDARTGVSES DREILARLPD RLQRITVYNK IDLTHRAAER HDEANGTAIS LSAKANQGIE
LLRQELLRIA GWHQAEDVFI ARERHLRALS AAQEHVAAAR NVVEGALPAL ELFAEELRLA
QQSLGEITGE FTADDLLGVI FSRFCIGK
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