Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_4149 |
Symbol | |
ID | 3566649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | - |
Start bp | 4448008 |
End bp | 4449477 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637682621 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_287345 |
Protein GI | 71909758 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 65 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCCCG CTCTCCAGCT AAAACTATCC CAGCATCTGG CGCTGACTCC TCAGCTCCAG CAGTCGATCA AGCTACTTCA GTTGTCGACG GTGGAAATGC AACAGGAAAT CGAGCGTTAT CTGCTCGAAA ATCCCATGCT GGAACGCGAA GACGAGCATG GCGGGGATAA TTTCTCAGCC GCCCAGCAGT TCGACGCGCC CCAAAGCAAC GAAGGTGAGC GCGAGCAAAA GGTTGAGCGG GAAGAACGGG ATGCCCGCGA GGAACGCGAG CAGGATGTGC CATCGGCTCC GTCGGAGGTG GACGATGACC GCTGGGCCTC CGATGCCGGG ACCTTTACCG GCGCCGGTCG CGATGAAGAC GACGATAGCG ATTCCCGCGA CATCCATGCG GCCAACGTCA GCCTGCGTGA CCATCTGGGC TGGCAACTGG GCATGACCCA GCTATCGGAG CGCGACCGCA GTCTGGTGCG TTTCCTGATC GAAGCACTCG ATGATGATGG CTATCTCTCG GCGCCGCTGG TCGAGTTGTG GGAAACCCTG CCGCCGGAAT ACGAAATTGA AATCGAAGAG CTGGAAATTG CGCTGCGCCA TATCCAGAAT TTCGACCCGA TCGGCATTGG TGCCCGCAGT CTTCAGGAAT GCCTGCAGCT TCAGCTCAAG GTTTTGCCGG TATGTGCCGA ACGTACACTG GCCCTGGCTA TTGTCGACAA GCATCTCGAA CTGCTCGCCG CCCGTGATTT CGCCAAGATT CGTCGTCTGA CAGGTTGCGA TGACGAGGCT TTGAAGGCGG CGCACAGCCT GATCACCAGC CTCAACCCAC GGCCAGCTGC CGGGTATGCC CAGATTGAAG CGCGCTACAT CACGCCGGAT GTGATCGTGA AGAAGCTAAA GGGCAAGTGG ACCGCCTACA TCAATCCGGA TGCCTACCCT CGGTTGCGCA TCAACCGTCT GTATGCCGAA ATTCTCGCCA AGCAGCGGCG GGGCAACGGC AATCTATCTA CGCAGTTGCA GGAGGCGCGC TGGCTGATCA AGAATGTCCA GCAGCGCTTC GAAACCATAC ACCGTGTCAC GCAGACCATT GTCGATCGCC AGCGCCAGTT CTTCGAACAC GGCGAAGTGG CCATGCGGCC GCTGGTGCTG CGTGAAATCG CCGATATTCT CGGCCTGCAC GAGTCGACTG TATCGCGGGT GACCAGCCAG AAATACATGG CGACACCGCG CGGTATCTTC GAACTGAAAT ACTTCTTTGG CAGCCATGTC TCCACCGATA GCGGTGGTGC TTGTTCTGCT ACGGCCATCC GCGCCCTGAT CAAGCAATTG ATTGCGGCTG AGGATGGCAA GAAGCCCTTG TCGGATAGCC AATTATCCGA AATACTAGGC CAGCAGGGAA TCGTAGTTGC CCGACGGACG GTTGCCAAAT ACCGCGAGTC GCTCAACATC CCCCCGGTCA ATTTACGCAA GACCCTGTAG
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Protein sequence | MKPALQLKLS QHLALTPQLQ QSIKLLQLST VEMQQEIERY LLENPMLERE DEHGGDNFSA AQQFDAPQSN EGEREQKVER EERDAREERE QDVPSAPSEV DDDRWASDAG TFTGAGRDED DDSDSRDIHA ANVSLRDHLG WQLGMTQLSE RDRSLVRFLI EALDDDGYLS APLVELWETL PPEYEIEIEE LEIALRHIQN FDPIGIGARS LQECLQLQLK VLPVCAERTL ALAIVDKHLE LLAARDFAKI RRLTGCDDEA LKAAHSLITS LNPRPAAGYA QIEARYITPD VIVKKLKGKW TAYINPDAYP RLRINRLYAE ILAKQRRGNG NLSTQLQEAR WLIKNVQQRF ETIHRVTQTI VDRQRQFFEH GEVAMRPLVL REIADILGLH ESTVSRVTSQ KYMATPRGIF ELKYFFGSHV STDSGGACSA TAIRALIKQL IAAEDGKKPL SDSQLSEILG QQGIVVARRT VAKYRESLNI PPVNLRKTL
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