| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_4123 |
|---|
| Symbol | |
|---|
| ID | 3566701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 4422278 |
|---|
| End bp | 4423810 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637682595 |
|---|
| Product | threonine dehydratase |
|---|
| Protein accession | YP_287319 |
|---|
| Protein GI | 71909732 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR01127] threonine dehydratase, medium form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 65 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCCGG ATTATCTCGA AAAAGTTCTC AACGCACAGG TTTACGACGT GGCGATCGAA
ACGCCGCTCG ACCTGGCCAG CAACCTTTCC GCCCGGGTCG GCAACAAGAT TATCCTGAAG
CGCGAAGACA TGCAGCCTGT CTTTTCCTTC AAGCTGCGTG GCGCCTACAA CAAGATTGCC
AGCCTGTCGG CCGAAAAGCT GAAGCGCGGT GTCATCTGTG CCTCGGCCGG CAACCACGCC
CAAGGGGTCG CCCTGTCGGC CAGCAAACTG GGTTGCCGGG CGGTCATCGT CATGCCGACC
TCGACGCCGG GCATCAAGAT TAACGCCGTT AAATCGCGGG GCGGCGAAGT GGTGCTGCAT
GGCGACTCCT TCGACGAAGC ATACGCCCAT GCGGTCGAAC TGGAAAAAAC CGAAAAGCTG
ACCTTCGTTC ATCCCTTCGA CGATCCGGAG GTGATCGCCG GACAGGGCAC GGTCGCCATG
GAAATCCTGC GCCAGCATTC GCGCCACAAC GGCCCGATCA CCGCCGTCTT CTGTGCCATC
GGCGGCGGCG GGCTGGCTGC TGGCGTGGCC GCCTACATCA AGCGCCTGCG TCCGGAAATC
AAGGTGATCG GTGTCGAAAC CTTCGACGCC GACGCCATGA AGCAGTCGCT GGCCGCCGGC
AAGCGCGTTC GCGTCGATCA GGTCGGGTTG TTCTCCGACG GCACCGCCGT CAAGCTGGTC
GGCGAAGAAA CCTTCCGGCT GTGCAAGGAA TACCTGGACG AGGTCATCCT GGTCGACACC
GATGCCATCT GTGCCGCCAT CAAGGATGTT TTCGAGGATA CCCGCTCGAT TCTGGAACCG
GCCGGGGCGC TGGCCGTCGC CGGCGCCAAG GAATATGCCC GTCAGCACAA ACTGAAGGAC
AAGAACCTGA TCGCCATCAC CTCCGGCGCC AACATGAATT TCGACCGCCT GCGCTTCGTT
GCCGAGCGGG CCGAATTCGG CGAACAGCGT GAAGCCGTCT TCGCGGTCAC GCTGCCCGAG
AAGCCGGGTG CCTACAAGAA ATTCCTTGGG CTGATCGGTC ACCGCAATGT GACCGAATTC
AACTACCGCT TCCACACCGC CAGCGAAGCT CACGTCTTCG TCGGCGTTCA GGTGGCCGAC
CGCAAGGAAT CGCTGAAGCT GGTCGACAGC CTGCAGAAAC ACGGTTACCC GACGCTCGAC
CTGACCGATG ACGAAATGGC CAAGAACCAT ATCCGTCACA TGGTCGGCGG CCATGCCCCG
GCGGTTTGCG AAAAGGGCAT GCGCGAGTTG CTCTATCGCT TCGAATTCCC GGAAAAGCCG
GGCGCCCTGA TGAACTTCCT GACCCAGATG AGCGCCGGCT GGAACATCAG CCTGTTCCAC
TACCGCAACC ATGGCGCCGA CTACGGTCGC GTCCTGGTCG GCATGCAGGT ACCGCCGGAC
GACATGGGGA AATTCAAGGA ATTCCTGACC AATCTCGGCT ACGCCCACTG GGACGAGAGC
CAAAACCCGG CATACAAGCT GTTCCTGGGT TAA
|
|---|
| Protein sequence | MHPDYLEKVL NAQVYDVAIE TPLDLASNLS ARVGNKIILK REDMQPVFSF KLRGAYNKIA
SLSAEKLKRG VICASAGNHA QGVALSASKL GCRAVIVMPT STPGIKINAV KSRGGEVVLH
GDSFDEAYAH AVELEKTEKL TFVHPFDDPE VIAGQGTVAM EILRQHSRHN GPITAVFCAI
GGGGLAAGVA AYIKRLRPEI KVIGVETFDA DAMKQSLAAG KRVRVDQVGL FSDGTAVKLV
GEETFRLCKE YLDEVILVDT DAICAAIKDV FEDTRSILEP AGALAVAGAK EYARQHKLKD
KNLIAITSGA NMNFDRLRFV AERAEFGEQR EAVFAVTLPE KPGAYKKFLG LIGHRNVTEF
NYRFHTASEA HVFVGVQVAD RKESLKLVDS LQKHGYPTLD LTDDEMAKNH IRHMVGGHAP
AVCEKGMREL LYRFEFPEKP GALMNFLTQM SAGWNISLFH YRNHGADYGR VLVGMQVPPD
DMGKFKEFLT NLGYAHWDES QNPAYKLFLG
|
|---|
| |