Gene Daro_4086 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_4086 
Symbol 
ID3566850 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp4379691 
End bp4381586 
Gene Length1896 bp 
Protein Length631 aa 
Translation table11 
GC content60% 
IMG OID637682558 
Productresponse regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal 
Protein accessionYP_287282 
Protein GI71909695 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTCA CATCGCCGCT TCGCTCGGTG CGAGGTCGGC TGCTGATCGT CGCCATTGCC 
ATCGAAGCGG TGATGCTGAC TTTGCTGGTC GCCAACAGCC TGCGCCTGCT GACCACCCAT
ATGGGCCGAC AGGCGGAGCA GCATGTCGAG GAAATCGCCC CCGTGCTGAT CGCCGCCATC
GTGGCGCCAC TGGCCCAGCG CGACTATGCC ACCGTGCAGG CGGTGTTCGA CGAAAGCACC
AAGGTTGGCG GCATCGATTA CCTGGCGCTT GCCAACAATG ACGGAAAACT GGTGGCCAGC
AGCGGCTGGC CGGAAGGCGC AGCCCTGCCG CCAGCCGACC CGCACCTCAA TATCTTTGAT
GCCGACAAGC AGAAACCGCG CTACGACGTG CTGGTTCCCG TCGTTACCTA TGGCCAGAAA
ATGGGTTCGC TGCACATCGG CATCGATCTC TCGCAAATCC GGACCGCCCA TAACCAGTTG
TTCTCCCAAG GCATTTTCAT CGCCCTGATC GAGATGCTGC TTTCGGCCGG TCTGATGATC
CTGCTCGGCT ATTTCCTGAC CCGCCATCTG GCGGGCCTGA CCCAGGCCAG CGAAGCAGTT
GCCGCCGGCA ACCTGACCCC GCCACCGGTG CCCGAAGGCA ACGACGAGGT AGGGCGCCTT
GGCGCCGCCT TCAACGCCAT GTCACGGGCG GTGGCCGAGC GCATTCTTGA ACTCACTGCC
TCACGCGACG AACAGGCCCG ACTGGCCAGA AGCGCCGAGA CGGCAGCCCG CGCCAAGACG
TCCTTTCTGG CCACGATGAG TCATGAAATA CGGACGCCGA TGAATGGCAT CCTGGGCATG
ACCGAACTGA CGCTGGCCAC CGATCTCACC GAGGAACAAC GCGAATACCT GACCTGGGTT
AAATCCTCGG GTGACAACCT GATGCGTGTT CTCAACGACA TCCTCGATTT CTCGAAGATC
AATGCCGGTG AACTCAACCT CGAACACATA CCGCTAGACC TGAGCAGCTT GCTGGACAGC
GTGGTCGCGC TCTATTCATC GGTGGCTGCC AACAAGGGCT TGCGCCTCTA CTGGGCCGCC
GACACCGAAC TTCCCGAGCA CCTTCTGGGC GACCCGGTGC GCATCCAGCA AGTGCTCAAC
AATCTGCTGT CCAATGCACT CAAATTTACC GAGCATGGCG AGGTCGCCAT TCGCGTGCAT
TGCGAGAAAA CCCTCGAAAA CAGCAAGGTG TGGCGTGTCC ACTTCACCGT CGCCGATACC
GGCATCGGCA TCCCGGCCAG CAAACTGGGC AATATCTTCG ACCCCTTCGC CCAGGCCGAA
GAATGGACAA CGCGCAAGTA TGGCGGCACC GGCCTCGGGC TCTCGATTGT CGAGCGTCTT
GTCCGGCTGA TGCATGGCGA GATTCGCGTT GAAAGTGCGG TGGGCGAAGG CACCCGCTTT
CATTTGCTGA TCCATCTCGA TCAGGCCGAA AAATCGACCC CGAAGATCGC CGAACTCGAC
AAGGAAGCGG CGCAGTGCAA ACTGACCAAC AAGCAAATCC TGCTGGTCGA AGACACGCCG
GTCAATCAGA AAATCGCCGA AAAGCTGCTT TCCCGCTATG GTTGCCGCGT GACCATTGCC
GTCAATGGTC TGGAAGCGCT GGCCGCTGTC GAACGCGACA CCTTCGATCT GATCCTGATG
GACATGCAGA TGCCCGAAAT GGATGGCGTC GAAGCAACCC GGCACCTGCG CATCCGGGAA
GCAGAACTCA AGCTGCCACG CCAGCCAATT GTCGCCATGA CCGCCAATGC CATGGAGGAA
GATCGGGAAC AATGCATCAC CGCCGGCATG GACGACTTCA TCGCGAAACC CTTCCGGGCT
GACGAAGTGA TCAGCATGCT GCTGCGTTAC CTCTAG
 
Protein sequence
MKFTSPLRSV RGRLLIVAIA IEAVMLTLLV ANSLRLLTTH MGRQAEQHVE EIAPVLIAAI 
VAPLAQRDYA TVQAVFDEST KVGGIDYLAL ANNDGKLVAS SGWPEGAALP PADPHLNIFD
ADKQKPRYDV LVPVVTYGQK MGSLHIGIDL SQIRTAHNQL FSQGIFIALI EMLLSAGLMI
LLGYFLTRHL AGLTQASEAV AAGNLTPPPV PEGNDEVGRL GAAFNAMSRA VAERILELTA
SRDEQARLAR SAETAARAKT SFLATMSHEI RTPMNGILGM TELTLATDLT EEQREYLTWV
KSSGDNLMRV LNDILDFSKI NAGELNLEHI PLDLSSLLDS VVALYSSVAA NKGLRLYWAA
DTELPEHLLG DPVRIQQVLN NLLSNALKFT EHGEVAIRVH CEKTLENSKV WRVHFTVADT
GIGIPASKLG NIFDPFAQAE EWTTRKYGGT GLGLSIVERL VRLMHGEIRV ESAVGEGTRF
HLLIHLDQAE KSTPKIAELD KEAAQCKLTN KQILLVEDTP VNQKIAEKLL SRYGCRVTIA
VNGLEALAAV ERDTFDLILM DMQMPEMDGV EATRHLRIRE AELKLPRQPI VAMTANAMEE
DREQCITAGM DDFIAKPFRA DEVISMLLRY L