| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3872 |
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| Symbol | |
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| ID | 3567756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 4165770 |
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| End bp | 4168331 |
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| Gene Length | 2562 bp |
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| Protein Length | 853 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637682346 |
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| Product | PAS |
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| Protein accession | YP_287070 |
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| Protein GI | 71909483 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACCGCG AGCAGATTCT TAGCATTCTC TATGACCTGT CGCTGACGAT TGGTGGAGAA
CTCGATCTCG ACAGTCTGCT CAAGAAGACG CTGCAGCGAC TGCTTTTCCA TACCTCGTTC
CCGACCGGTG TGGTTCTGGC GGCCCCACAT CGTTCCGAGT TCGGCGTTAT TGCGACACTG
GAAAAAGCCG TTGGTGATTA CATGTTGGCT GACCGTTGCG GTACCGGCAT CAATCTTTCG
GAAGGCGTGC TGGCCAGCGA GGTTGAGCTT CTGGCTGATC CCATAATGTT GCGCCCGTTT
TCGCTGGATC AGGTTTATAC GCACGCCTTG CGTCTGCCCA TCGACGGTCA GCGAACTATC
CTGCTGCTTG CGCCGGGCGA GCCGTCAGGC GGCCTGCCGT TGACCCAGAT ATTTCAGCCC
GTGCTGGCCA ATTTGGCCAA GGCAATTATT CTCTGTTGCA ATAATGATCG TCTGACCAGG
GCGCTGGCTG CAGACCGAGA TGATGCGCGT GCCGAGTTGG CCGTTGCCCT GGCCCAGAGC
GAACGCGAAC GCGCTTTTCT GGATAGTCTC TATGACGCGA TTCCCGATCT GGTCTGGGTC
AAGGATATGA ATGGGGCATA TCTGTCCTGT AACCCGATGT TTTCACGGTT TTTTAATGCC
AGCGAATACG ACATTGTCGG CCGAACCGAC TATGATTTTA TCGACAAGGA GTTGGCCGAT
TTTTTCCGGG AGAAGGATCG TGCCGCGGCA GAGGCCGGCG GGCCGACGAT CAACGAGGAG
TGGCTGACTT TCGGTGATAG TGGTTATCGC GGTCTGTTTG AGACGATCAA AACGCCGATG
CGCGATAAAG AGGGATATTT AATCGGTATC CTCGGTATCT CCCGGGAAAT CACCGAGCGG
CGGCGGGTCG AGGATGCCTT GCGGACCAGT GAAGCCGAGC TTGACAGGCA TCGGCAGCAT
CTGGAAGCGC TGGTGGCGGA ACGTACGCAT GCCTTGGCGC AGGCCAATGT CCAACTCGAA
CAGACCATAT TTGCCATGGA CCGCGTCGGC ATCGGTATTC ACTGGGTGGA CACCCAAGGC
TACTTTATCT ATGTGAATCG GGTTGCTGCC GCAATGCTCG GTTATTCCGT CGACGAAATG
ATGCGATTAA GCGTGCCGGA TATCCATCCC GATTTCACGA TTGAAGGCTT TGGCGCCGCG
ACGGAAAAAA TCAGGCAGGC CGGCCGGGTG TCCTTGGATG CGCAACACCG GCATCGTGAC
GGGCATATGG TTCCAGTCAG TATCAATATT TACTATCGGC CTGAAACCGC TCAGGAGCCT
GCTCGTTACA TTACATTCGT CAGTGATATC AGCGAACGAA AACGGGCCGA ACAGGAGCTG
CGCGAGGCGA AAGAACTGGC CGAGCAGGCA ACGAAGGCCA AAAGCGCCTT CCTGGCAAAT
ATGAGCCATG AGATCAGGAC GCCGATGAAC GCCATTCTCG GTTCTACTTA CCTGATGCGC
CGTGGGCTCA CGGATGCCGC GCTGAATGAA CCTCTGGAGC GGATTGAAGC TTCCGGCAAG
CACCTCCTGT CAATCATCGA CGACATTCTG GATCTTTCCA AAATAGAGGC CGGCAAGCTG
GTGCTTGAGG AAGCGCCGCT GATGCTCCCG CAGTTATTGG GAGAGGTGGC GGAAATGCTC
AGGGGGCGGG CTCAGGAGAA AAATCTGGCG GTCCGCGTCG AGTCCGCGGG ATGGCCGCTC
AATGTGCTGG GCGATGCCAC TCGCTTGCGC CAGGCGCTGA TCAATTACGC CAATAATGCG
ATCAAGTTTA CCGACCATGG GGCGATTACT TTACGCAGCA GGGTGATCGA GGAGAACGAT
GAAAGCATAC TCGTCCGCCT CGAAGTGGAA GATACGGGCA TCGGTATTTC CCCGGAAGCC
TTGGGACGTT TGTTTACTCC GTTTGAACAA GCCGACTCGT CGACGACCCG GAAGTACGGA
GGGACTGGCT TGGGTCTGGC CATTACCCGT CACTTGGCGA TATTGATGGG GGGCGCTGCT
GGCGCGGAAA GTTCGCTGGG TAAAGGCAGT CTCTTCTGGA TTACGGCGCG CCTGAAGCGC
CATCAAGTTC AGGCGTCCGA TAAAGGGATG CTGGTCACAG GGTCCAGCCG CGATGTTGAG
GCCGCGTTGC GGCAGCGTTA TGCCGGCCGT CTTGTTCTTC TGGTCGAGGA CGATCCGATC
AATCGGGAGG TTGCCCAGAT GATGGTCGAA GAGGTCGGCT TGGCTATCGA TGTGGCTGAA
GATGGGTGTG AAGCGCTCGA TAAGGTCAGC CAAACCAATT ACGCACTGGT CCTGATGGAC
ATGCAGATGC CGCGTATGGA CGGGTTGGAG GCGACGCGGC GCATCCGGCT CCTTGAAAAC
CGGAAGAACC TGCCCATTCT CGCCATGACG GCCAACGCCT TTGCCGAAGA TCGCGAACGG
TGCATGGCTG CCGGCATGAA CGATTTTGTC AGCAAGCCGG TCAATCCAGA TTTGTTGTAC
GCAGCCTTGC TACGGTGGCT GGATTTTTCT GCCGGGCTCT GA
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| Protein sequence | MNREQILSIL YDLSLTIGGE LDLDSLLKKT LQRLLFHTSF PTGVVLAAPH RSEFGVIATL
EKAVGDYMLA DRCGTGINLS EGVLASEVEL LADPIMLRPF SLDQVYTHAL RLPIDGQRTI
LLLAPGEPSG GLPLTQIFQP VLANLAKAII LCCNNDRLTR ALAADRDDAR AELAVALAQS
ERERAFLDSL YDAIPDLVWV KDMNGAYLSC NPMFSRFFNA SEYDIVGRTD YDFIDKELAD
FFREKDRAAA EAGGPTINEE WLTFGDSGYR GLFETIKTPM RDKEGYLIGI LGISREITER
RRVEDALRTS EAELDRHRQH LEALVAERTH ALAQANVQLE QTIFAMDRVG IGIHWVDTQG
YFIYVNRVAA AMLGYSVDEM MRLSVPDIHP DFTIEGFGAA TEKIRQAGRV SLDAQHRHRD
GHMVPVSINI YYRPETAQEP ARYITFVSDI SERKRAEQEL REAKELAEQA TKAKSAFLAN
MSHEIRTPMN AILGSTYLMR RGLTDAALNE PLERIEASGK HLLSIIDDIL DLSKIEAGKL
VLEEAPLMLP QLLGEVAEML RGRAQEKNLA VRVESAGWPL NVLGDATRLR QALINYANNA
IKFTDHGAIT LRSRVIEEND ESILVRLEVE DTGIGISPEA LGRLFTPFEQ ADSSTTRKYG
GTGLGLAITR HLAILMGGAA GAESSLGKGS LFWITARLKR HQVQASDKGM LVTGSSRDVE
AALRQRYAGR LVLLVEDDPI NREVAQMMVE EVGLAIDVAE DGCEALDKVS QTNYALVLMD
MQMPRMDGLE ATRRIRLLEN RKNLPILAMT ANAFAEDRER CMAAGMNDFV SKPVNPDLLY
AALLRWLDFS AGL
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