Gene Daro_3843 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_3843 
Symbol 
ID3568014 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp4134700 
End bp4136853 
Gene Length2154 bp 
Protein Length717 aa 
Translation table11 
GC content60% 
IMG OID637682317 
ProductRelA/SpoT protein 
Protein accessionYP_287041 
Protein GI71909454 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones53 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCTCCG TACCGTCAAC TCAGCCGCCT GCTTATGAGG AAGCCGCTTA CCAGGTCTTC 
CTCGATAGTC TCGAATACCT ATCTCCCGTT GATGTAGAGA GAATCAAGGC GGCGTATGCC
TACGCCGCCC GTGCGCACGC CAGTCAGCGG CGCATGTCCG GCGAGCCCTA CATCACTCAC
CCGCTGGCCG TGGCTGGCGC GGTCGTCGAG TGGCGGATGG ATGCCGATGC GGTGGCGGCT
GCGCTTCTGC ACGATGTGCT GGAAGATACC GGCGCCACCA AGCACGAACT GGCCGAAAAA
TTCGGCAAGG AAGTGGCTGA ACTCGTCGAT GGCCTGTCCA AGCTCGACAA GATGGAGTTC
GCTTCCTATC AGGAGGCGCA GGCCGAGAAT TTCCGCAAGA TGCTGATGGC CATGGCGCGC
GATTTGCGCG TTGTGCTGAT CAAGCTCGCA GACCGCCAGC ACAATCTGGC GACAATGTCG
GCCATGCGCG CCGACAAGCG TGCCCGCATT GCCCGGGAAA CGCTGGAAAT CTACGCGCCG
ATTGCACTGC GCCTGGGGCT GAACAAGCTC TACCGCGAGT TGCAGGATAC GTCGTTCGAG
CTGATCCACC CGCACCGTGC CGAGGTGCTG GCCAAGGCGC TCAGTGCGGC ACGTGGTAAC
CGCCGGGAAT TGCTGACCCA GATTCTCAAC GGCATTCAGG ACAAACTTCG CCATGCCGGC
TTGAAGGCCG AGGTTTTTGG CCGCGAAAAG AGCCTGTATT CGATCTTTCG CAAGATGAAG
GACAAGCATC TGTCGTTTTC GCAGGTGCTC GATATCTACG GTTTTCGGGT GGTTGTCGAC
AATGTGCCGA CCTGCTATCT GGCACTCGGC GCCTTGCACA GCCTTTTCAA GCCGGTTCCC
GGCAAGTTCA AGGACTACAT TGCGATCCCC AAGGCCAATG GCTACCAGTC CTTGCACACG
ACCCTGATCG GTCCTTACGG TACGCCGGTC GAAGTCCAGA TTCGCACCCG CGAAATGCAC
CATGTGGCGC AGGAAGGCGT TGCGGCGCAC TGGCTGTACA AGGACATGGA CGAAACTAGC
GCCGATCTGC AGATCAAGAC GCACAAGTGG TTGCAGTCGC TGCTCGAAAT GCAGACTAGC
GATTCGTCCG AGTTCTTCGA GAACGTCAAG ATCGACCTCT TCCCCGATGA AGTCTATGTC
TTTACGCCCA AGGGCAAGAT CATGGCCATG CCGCGCGGGG CGACGGTGGT TGATTTTGCC
TACGCGGTGC ACACTGACGT CGGTCATCAT TGCTCGGCCG TGCGGATCAA TCACGAGCTG
TCGCCGCTGC GGAGCGAATT GCACAACGGC GATCTGGTCG AGATCATCAC CTCCGGGCAG
GCCAGCCCCA ATCCGGTCTG GCTGACCTAC GTCAAGACCG GCCGCGCTCG CAGCAAAATT
CGCCATTTCC TGCGCACCAT GCAGAATGAG GAATCGGCCC GCCTCGGCGA GCGCCTGCTG
CGCCAGGAGC TGTTGTCGCT CGGCGTCGTG CCGATTTCGA TTCCGACCGA CGCCTGGGAT
CAGCTGGTCA AGTCCGGTGG CCAGAAGTCG ATGGAAGAGA TTTACACCGA AATTGGTCTC
GGCAAGCGTC TGCCTTCGGT TGTTGCCCGC CGTCTGCTGG CCCGCGAAGA CATGTCGCAC
GATTCGCCGA GCAGCATGAC GCTGGCCATC CACGGCACCG AGGGCATGGC CATCCAGTTG
GCGCGTTGCT GCCAGCCGAT TCCGGGCGAT CCGATCATCG GTTCGATCAA GAAGGGCACT
GGCCTGGTGA TTCATACCCA CGATTGTCCG ACCATTCGCA AGTCGCGTTC GTCCGAGCCG
CAGAAGTGGA TCGATGTCGA ATGGGAGCCC GAAGAGGGCA AGCTGTTCGA TATTCGCATC
ACGGTCGAGG TCAAGAATGC GCGGGGCGTC TTGGCGCAAG TCGCTTCGGC GATTGCCGAA
GCCGGCTCGA ATATCGAGCA TGTCTCGATG GATGCCGACC CGGAGCGTCT GTTCACTTCC
CTCCGCTTCA CCATTCAGGT TGCCCACCGC AATCACCTGG CCGCCGTGAT GCGTGGCATG
CGCCATATTC CGGAAGTGAC CCGGATTACC CGTGAAAGGG GAGGCGAGAC TTGA
 
Protein sequence
MGSVPSTQPP AYEEAAYQVF LDSLEYLSPV DVERIKAAYA YAARAHASQR RMSGEPYITH 
PLAVAGAVVE WRMDADAVAA ALLHDVLEDT GATKHELAEK FGKEVAELVD GLSKLDKMEF
ASYQEAQAEN FRKMLMAMAR DLRVVLIKLA DRQHNLATMS AMRADKRARI ARETLEIYAP
IALRLGLNKL YRELQDTSFE LIHPHRAEVL AKALSAARGN RRELLTQILN GIQDKLRHAG
LKAEVFGREK SLYSIFRKMK DKHLSFSQVL DIYGFRVVVD NVPTCYLALG ALHSLFKPVP
GKFKDYIAIP KANGYQSLHT TLIGPYGTPV EVQIRTREMH HVAQEGVAAH WLYKDMDETS
ADLQIKTHKW LQSLLEMQTS DSSEFFENVK IDLFPDEVYV FTPKGKIMAM PRGATVVDFA
YAVHTDVGHH CSAVRINHEL SPLRSELHNG DLVEIITSGQ ASPNPVWLTY VKTGRARSKI
RHFLRTMQNE ESARLGERLL RQELLSLGVV PISIPTDAWD QLVKSGGQKS MEEIYTEIGL
GKRLPSVVAR RLLAREDMSH DSPSSMTLAI HGTEGMAIQL ARCCQPIPGD PIIGSIKKGT
GLVIHTHDCP TIRKSRSSEP QKWIDVEWEP EEGKLFDIRI TVEVKNARGV LAQVASAIAE
AGSNIEHVSM DADPERLFTS LRFTIQVAHR NHLAAVMRGM RHIPEVTRIT RERGGET