Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3814 |
Symbol | |
ID | 3567970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | - |
Start bp | 4098547 |
End bp | 4099941 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637682288 |
Product | aromatic hydrocarbon degradation protein |
Protein accession | YP_287012 |
Protein GI | 71909425 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG2067] Long-chain fatty acid transport protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 0.0090168 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0676668 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGACAA GAAAAATCAT GGCCTCGGTG CTGGTTTCGG GTCTGGCCGG CTTTAGCAGC CTGGCGCAGG CGACTGATGT GTTCCGCCTG GAAGGTTACG GCGCGGTATC GCGCGGTATG GGTGGTACGG CGGTCGCCCA CGATGTCGGC CCGGCCGGCA TGATGACCAA TCCGGCCACG CTGTCGCTGA TGCAGGAGGG CGACCAGGTC ATGGGCGGGC TGGATCTGGT GACGACCGAC ATCGAGGTCA GGAACAAGAA CACCGGCGAG CGCGTTTCGT CGGGCGAACA CGCCAGTAAC CGGGGGCCGT ATGCTGCGCC GGAGCTGGCC TATACCAAAC GCTTCGGCGA CTGGGCGGTG GGCGTCGGGG CTTTTGCCCA GGGCGGCCTC GGCACCGAAT ACGGTACCGG TAGCTTCCTG TCGAGAGCGG TCGGTGGACT CAACACCGGC CTCGATAATT CCAGCCGCCT GCTGGTCCTG AACATTCCCT TTGCCGCGAG TTTCAAAGTC AGCGAAAAAC TGGCCGTCGG CGGCAGCTTC GATGCGATGT GGCAGGGCCT GAACCTGAAC CTGCTGCTCG GCGCCGATCA GGTCGGCAGC CTGCTGAGCT CCGGCCGGGC GACCGGTACC CTGGTGCCGG TTCTGGGTGG CCTGCCTGAT CTGCGCGGCG CTCACTTCAG CCTGACCAAG AACCAGCCGC TGGGCAGCGG CGTCGATGCC TGGGGCTACA GCGGCAAGCT GGGCATGATC TACAAGGCAA CCCCGGAGAC GACACTGGGC GCCTCCTATA CCTTCAAGAG CCAGATGGAC GACATGGAGG GTGGTGCCAC CCTGACGGCG GTGGACGGCA TTGCCGGCCA GATTCCGCTG AAGGGCAAGA TCAAGATCCA GGATTTCCAG ATGCCGGCCC ATCTCGATCT CGGCTTCAAC CAGCGCCTGT CGGCACAATG GACGGTCGCG GTCGATGTCT CGCAGGTCTT CTGGAAGGAT GTGATGAAGG ACATCAAGGT GGCCTTCGTG GCTGACCCGA GCGCGGCCGT GCCGACCGGC GGCACGCTCA ATATCCTGCT GCCGCAGGAC TACAAGGATC AGACCATCCT GTCCCTGGGC ACGGCCTACG ACCTGAGCGA TCAGCTGACG CTGCGCGGCG GTCTGCGTTT CGCGACCCAG GCCTTGCGCT CCTCGACGCT GTTTGCGGTG ATCCCGGCCA CGCCGAGAAC GCATTTGTCG GCCGGCCTGA CCTATGCCCT GTCGAAGCAG AGCAAGATCG ATTTCGCCTA CTCCCACGCC CTCAAGGAAA CGATGGATAA CAGCAGCCTG CCGAACACCT CCGATCCGAT TCAGGTCAAG CACGCACAGA ACAACGCGAC CATCAATTTC CGCTATAACT TTTGA
|
Protein sequence | MTTRKIMASV LVSGLAGFSS LAQATDVFRL EGYGAVSRGM GGTAVAHDVG PAGMMTNPAT LSLMQEGDQV MGGLDLVTTD IEVRNKNTGE RVSSGEHASN RGPYAAPELA YTKRFGDWAV GVGAFAQGGL GTEYGTGSFL SRAVGGLNTG LDNSSRLLVL NIPFAASFKV SEKLAVGGSF DAMWQGLNLN LLLGADQVGS LLSSGRATGT LVPVLGGLPD LRGAHFSLTK NQPLGSGVDA WGYSGKLGMI YKATPETTLG ASYTFKSQMD DMEGGATLTA VDGIAGQIPL KGKIKIQDFQ MPAHLDLGFN QRLSAQWTVA VDVSQVFWKD VMKDIKVAFV ADPSAAVPTG GTLNILLPQD YKDQTILSLG TAYDLSDQLT LRGGLRFATQ ALRSSTLFAV IPATPRTHLS AGLTYALSKQ SKIDFAYSHA LKETMDNSSL PNTSDPIQVK HAQNNATINF RYNF
|
| |