| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3750 |
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| Symbol | |
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| ID | 3568415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 4030379 |
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| End bp | 4032544 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637682225 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_286949 |
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| Protein GI | 71909362 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 50 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGCA TCAGGGATGG AACATGTTTG ATAATGTGGC CAATTCCGGG CACGGCAGTT
CAGGCAGCAG CCGGACTTAT CACAAGTAAT ATAAATTACC CGGATTGGCT GATAATGACG
TCCGTGCGGC TGATCCTCTC CCTATTTCTT TTGTTGTTTC TCGCTCCTGT CTTTGCGGTG
GAGCGGGTCG TCCTGCAACT GAACTGGAAA CATCAGTTCC AGTTTGCCGG CTACTACGCC
GCCATCGACA AGGGGTATTT TCGCGATGCC GGCTTCGACG TCAGTCTGCG TGAGTTAAGC
GAGGGAAGCG ATCCGGTCAG TGCCGTGCTC GGCGGCGAAG CGGAGTTCGG TGTCGCCGCT
TCCGAACTCG CCCTGCATCG GGCCCAGGGC AAACCGGTCG TGGCCTTGGC CGCCATCGTC
CAGCGCTCGC CGCTGGTGCT ATTGGTCAAC CGGCGAAAGA TCACCAGCAT TGATGCATTG
AATGGTGCTC GCATCATGTT GACGCCGCAT GAAACGGAAC TGTTTGCCTA TCTGCGTCGC
GAAGGGGTGA CGCGCTATGA CGCGGTGTCG CATAGTTTCG ATCCCAAGGA TCTGATTTCA
GGCCGGGTTG ATGCCCTGTC CGGCTATGTT ACCGACGAAC CCTACACCTT GCAGTCCGTG
GGTTTCCCCT ATCTGGCTTT CAGTCCGTCG GCTGTCGGCA TCAATTTTTA CGGCGACACC
CTATTTACGA CCGAAGGACG GGCCCATAGC GCCCCGGAGC GCGTCCGCGC CTTTCGCGCC
GCCGCCATCC AGGGCTGGAA GTATGCGATT GAGCATCCGG AAGAAATCGC TGATCTGATC
CTGAAGAAAT ACTCCAGGCG ACATGAGCGG GCGCATCTGT TATTCGAAGC GAAGGAGTTG
AAGCGCCTGA TGCAGCCGGA TCTGGTCGAG CTCGGCCTGC AATCAAGCAG CCGTTGGCAG
CAGATTGCCC AGACCTACGC CGAGTTGGGC ATGCTGCCGG AAAAGTACTC GGTTAGTGGA
TTGATCTTCG AAGCCGAAGA ACGGAAACTG CCGGTATGGT TTGGCTACGC ACTTGCCGGC
ATTGCGCTGC TGATCCTTGT GGTTGCCGGA GCGGCAGTCT ATTTCGCTCG TCTGAACCGG
CGTCTGACCC GCGAGATGAT TTCGCGACGG GTGTTCGAGC GGGCGTTGAG TCATAGCGAG
GAGCGCTATC GGCAACTCGC CGAGCACAGC AAGGATGTGA TCTGGACCGT CGATCTCGCC
ACCATGCGCT TTAGCTATGT CAGTCCCTCG GTGGAAGCGG TGCGCGGGTT CACGCCTGAC
GAAGTGATCA ACCAGACGCT GGCTGAAGCG ATGACCCCGG CTTCCTATGC CGCCGTTGTG
GCAACGCTTG AGGAACATCT CGCCCGATTG GCTGCCGGCG ATCTGAGCGC CCAGTCGGCG
ATGACGGAAA TCGAGCAACC GCACAAAAAT GGCGGGGTCA TCTCATCCGA GGTTGTCGGC
AGCTTTCTGC TCGATCAACA AGGCAAGCCT TTCGCGTTGC TGGGCATTGC CCGTGATATT
TCGGAGCGCC GCCGCTCCGA GGCCGAATTG CGCAGCGCCA ACGACAAGCT GCGCAAGCAG
TTGGAAGAAA TCGAAAAGTT GCAGGTGGCG CTTCGGGAGC AGGCAATTCG CGATAGCCTG
ACCGGTTGCT TCAATCGGCG CTATCTCGAT GAAACACTGG AGCGCGAGCT CTCCCGTTCG
CGCCGTGAAG GCTACCCTCT TTCTTTGCTT ATTCTCGACC TCGACCATTT CAAGCGGATC
AACGACACCT ATGGCCACAT GGCCGGCGAT CAGGCACTGA TCGTTCTGGC CGAAACTCTG
CGCGCTGGCA TCCGGCACGA GGACGTCCTC TGCCGCTACG GCGGCGAGGA ATTCGTCATC
CTGATGCCGC GCATGCCCTT GGCCATTGCC GCCGAAAGGG CTGAACTCTG GCGCAGCAAA
ATTGCCGAAA TCCGTGTCAC CTTCGGCAAT TTCGAGCTTT CCTTTACCGC CTCGGCCGGG
GTTGCAGCCT ACCCCGATCA CGGCAAAATG CCAGATGAAC TGACCCAGGC CGCCGATCAA
GCACTCTACA CTGCCAAAAA CGAGGGACGT AACCGGGTCG TGGTCTATTC AGCGAACCGC
GGTTGA
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| Protein sequence | MPSIRDGTCL IMWPIPGTAV QAAAGLITSN INYPDWLIMT SVRLILSLFL LLFLAPVFAV
ERVVLQLNWK HQFQFAGYYA AIDKGYFRDA GFDVSLRELS EGSDPVSAVL GGEAEFGVAA
SELALHRAQG KPVVALAAIV QRSPLVLLVN RRKITSIDAL NGARIMLTPH ETELFAYLRR
EGVTRYDAVS HSFDPKDLIS GRVDALSGYV TDEPYTLQSV GFPYLAFSPS AVGINFYGDT
LFTTEGRAHS APERVRAFRA AAIQGWKYAI EHPEEIADLI LKKYSRRHER AHLLFEAKEL
KRLMQPDLVE LGLQSSSRWQ QIAQTYAELG MLPEKYSVSG LIFEAEERKL PVWFGYALAG
IALLILVVAG AAVYFARLNR RLTREMISRR VFERALSHSE ERYRQLAEHS KDVIWTVDLA
TMRFSYVSPS VEAVRGFTPD EVINQTLAEA MTPASYAAVV ATLEEHLARL AAGDLSAQSA
MTEIEQPHKN GGVISSEVVG SFLLDQQGKP FALLGIARDI SERRRSEAEL RSANDKLRKQ
LEEIEKLQVA LREQAIRDSL TGCFNRRYLD ETLERELSRS RREGYPLSLL ILDLDHFKRI
NDTYGHMAGD QALIVLAETL RAGIRHEDVL CRYGGEEFVI LMPRMPLAIA AERAELWRSK
IAEIRVTFGN FELSFTASAG VAAYPDHGKM PDELTQAADQ ALYTAKNEGR NRVVVYSANR
G
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