Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3727 |
Symbol | |
ID | 3568160 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 4005579 |
End bp | 4007297 |
Gene Length | 1719 bp |
Protein Length | 572 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637682200 |
Product | TPR repeat-containing protein |
Protein accession | YP_286926 |
Protein GI | 71909339 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 55 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.239991 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACCGA AGTTCATCGC TGCCGCCATC TCCCTCGCCC TGGGCCTCAC CCAAGGCGGA TACGGTCTGG CCGCCGACGA GCCCCCCGCC AAGCCTATCG CCAAACGCAT GGCGGCCCGC GTAGCATCCT CGGAGGATCT GCTGGCACGC ACCGTTTTCC AGGCACTGGT CGGCGAATTC GCCCTGCAGC GCGGTGATGC CAGGCTCGGC TCCGATGCCT GGACCGATCT CGCCCAACGT ACCCGCGACC CCAAGGTGAT CGCCCGGGCC ACCGAAGTTG CCGGGTTTGC CCGCCAGTAT GACCGCGCAC TCGAACTCTC GAAACTGTGG ATAGAAATCG AACCCGATTC CGCACAAGCC AGACAAACGC AATCTTCCCT GCTGGTCATG GCCAACCGCC TTGACGACCT GGCGCCGCAA CTGACTGCGC TACTTGAACA GGACAAGCCA AATCTGGCCA GCAACCTGCT GCATCTGAAT CGCATGCTCT CCCGCATCGG CGACAAGAAA TCCGCACAAG CCCTGGTCGA TCGTATTGCA ACCCCCTACG ACAGCCTGCC CGAGGCTCAT TTTGCGATGG CCCAGGCGGC ATCGAACGCC AACGACAACC TGCGCGCCCT GAACGAAACA GAAAAGGCCT TGCAACTCCG CCCCGACTGG GAAATGGCCG CGCTGGCTCG CGCCCAACTA CAAGCGCGCC AATCCGGCAA GACGGCGATA GACAGCCTCG CAGACTTTGT CAGCCACAAC GCTACCGCCC GCGATGCCCG CCTGACCCTG GCCCGTCTGC TGATCAGCGA AAAACGCTAC AGCGAAGCGC GCCAGCATTT TGATCGCCTG ATCAAGGACA ACCCGGACAG CCCGGAAGTC ATTTACCCGG TTGCCATGCT CGCCCTGCAG CAGGGTGACG CAAACACCGG CCGTAAACAG CTCGAACACT TGCTGACCAC CGACTTCCCG GACAAAAACA CCGTGCACTT CTTCCTTGGC CAACTCGACC AGGAACAGAA AAAACCGGAA ATGGCACTCG AGCACTTCCG CCAGGTCACT GGCGGCGAGC AATACATCGC GGCCCGCTCG CGAGCCGCCC AGATCCTGCT GCAACAGGGC AAAAGCGAAG AGGCCCGCGA ACTCCTGCAC AACACGCGCG GCGGCACGGT CGCCGAACGC ACCCAGTTAA CCCTGGCTGA ATCACAGCTA TTGCGCGAAG CAGGCCGCCA TAACGACGCA TACATCGTTC TCGATAGTGC CCTTTCCGTG CAACCCGACA ATACCGAGCT GCTCTACGAA GCAGGCCTGA CGGCAGAACG CATCGGCAAA CCGGAGCTGC TTGAAACCCA CCTCAAACAA CTGCTCGCCA TCAAACCCGA CCATGCCCAC GCCCTGAATG CACTGGGCTA CTCCTGGGCC GAACGCAACA TTCGCCTGCC GGAAGCCCAT GACCTGATTG CCAAGGCGCT CAGTCTGGCA CCGGAAGATC CCTTCATCAT GGACAGCATG GGCTGGGTGC TCTATCGCCA GGGCAAGCTC ACCGAAGCCC TGCAAACACT GGAGCAGGCC TACAAGATCA AGGCCGACCC GGAAATTGCC GCCCACCTCG GCGAGGTTCT GTGGGCGCTG GATCGCAAGG ACGAAGCCCG CAGTCTCCTC AAAGCGGCTG CCAAGGCCAA TCCAGACAAC GAAGTGCTGA TCGGCGCCGT CAAGAAACTA CTGCCTTGA
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Protein sequence | MSPKFIAAAI SLALGLTQGG YGLAADEPPA KPIAKRMAAR VASSEDLLAR TVFQALVGEF ALQRGDARLG SDAWTDLAQR TRDPKVIARA TEVAGFARQY DRALELSKLW IEIEPDSAQA RQTQSSLLVM ANRLDDLAPQ LTALLEQDKP NLASNLLHLN RMLSRIGDKK SAQALVDRIA TPYDSLPEAH FAMAQAASNA NDNLRALNET EKALQLRPDW EMAALARAQL QARQSGKTAI DSLADFVSHN ATARDARLTL ARLLISEKRY SEARQHFDRL IKDNPDSPEV IYPVAMLALQ QGDANTGRKQ LEHLLTTDFP DKNTVHFFLG QLDQEQKKPE MALEHFRQVT GGEQYIAARS RAAQILLQQG KSEEARELLH NTRGGTVAER TQLTLAESQL LREAGRHNDA YIVLDSALSV QPDNTELLYE AGLTAERIGK PELLETHLKQ LLAIKPDHAH ALNALGYSWA ERNIRLPEAH DLIAKALSLA PEDPFIMDSM GWVLYRQGKL TEALQTLEQA YKIKADPEIA AHLGEVLWAL DRKDEARSLL KAAAKANPDN EVLIGAVKKL LP
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