| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3535 |
|---|
| Symbol | |
|---|
| ID | 3567613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 3786170 |
|---|
| End bp | 3788308 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637682008 |
|---|
| Product | glycyl-tRNA synthetase, beta subunit |
|---|
| Protein accession | YP_286734 |
|---|
| Protein GI | 71909147 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0751] Glycyl-tRNA synthetase, beta subunit |
|---|
| TIGRFAM ID | [TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.028288 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCCA AGAATCTGCT CGTTGAACTG TTCGTCGAGG AACTGCCGCC CAAGGCCCTG
AAGAAGCTTG GTGAAGCCTT CTCTGCCGCA CTGGCGAATT CCCTGAAAAA TGCCGGCCTG
GCGCCGGCGA CAGCAAGCAT CACCGCTTAC GCCTCGCCGC GTCGCCTGGC TGCCCACGTC
ACCGATGTTG CAGCAGTCGC CGCCGACAAG CCGGTTGCCC AGAAGCTGAT GCCGGTTGCG
GTCGGCCTGG ATGCGGCCGG CAACGCCACG CCGGCCCTGC TCAAGAAGCT GGCCGGATTG
GGAATAGATG CGGACGCCGC CGCTTCCGTA GTCGCCAGCC TGCGCCGCGA AAATGACGGC
AAAGCTGACG TGCTGTTCTT CGACAGTCTG GCCAAGGGCG CCACGCTGGC CGAAGGCCTG
CAGAAGGCCA TCGAGGCCGC ACTGGCCGCA CTGCCGATCC CCAAGGTCAT GACCTACCAG
TTGCAGGACG GTTGGAGCAG CGTCAATTTC GTCCGTCCGG CCCATGGCCT GGTCGCCTTG
CACGGCGGAG ATGTCGTGCC GGTCGCCGTA CTCGGCCTGA ATGCCGGTCG CGAAACGCAC
GGCCACCGCT TTGAAGCCAC CGTCGATCCA GTCGTTTTTG CCAACGCCGA CGAATACGCC
AGCAAGCTGG CCACCGACGG CGCCGTGATC GCCTCGTTTG CCGAGCGCCG GGCCGAAATC
GCTCGCCAGC TTGAAGGCGC AGCCGCCAAG GCCGGCCAAG CCACAGGCGC TGCGCTTCGG
CCGATCGACG ACGAGGCGCT GCTCGACGAA GTGACCGCGC TGGTCGAGCG CCCGAACGTG
TTGATCGGCC AGTTCGAACA GGAGTTCCTC GCCGTGCCGC AGGAATGCCT GATCCTGACC
ATGAAGGCGA ACCAGAAGTA CTTCCCGCTG CTTGATGCCA CCGGCAAGCT GACCAACAAG
TTCCTCGTCG TCAGCAATAT CAGCCCGGAA GATGCCTCGG CCGTAATCGG CGGCAATGAG
CGTGTCGTGC GCCCGCGTCT GGCCGACGCA AAGTTCTTCT TCGACCAGGA CCGCAAGAAG
TCGCTGGAGT CCCGCGTCAT CGGCCTGTCC AAGGTCGTCT ATCACAACAA GCTGGGCACC
CAGGGCGAGC GCATGCAACG CGTTGCCGCC ATCGCCCGCG CCATCGGCGA ATCCTTGGGT
GGCGAAGCGC TGGCGCTGCA CGCCGAGCAG GCAGCCGTGC TGGCCAAGGC CGACCTGCTG
ACCGACATGG TTGGCGAATT CCCGGAACTT CAGGGCACCA TGGGCCGCTA CTACGCGCTG
CATGACGGCC TCGCTGCCGA GATCGCCGAT GCGGTCGAAG ACCACTACAA GCCGCGCTTT
GCCGGCGACA CCCTGCCGCG CGGCATCGTC GGCACCGTCG TCGCCCTGGC CGACAAGCTG
GAGACGCTGG TCGGCATGTT CGGTATCGGC CAGATTCCGA CCGGCGACCG CGACCCGTTT
GCGCTGCGCC GCCATGCGCT CGGCGTCATC CGCATGCTGG CGGAAAACAA TCTGGCCCTG
CCGCTCGACC ATCTGCTGCA AACCGCCGCC GCGCCGTTCG CCTCAGTCGA TGGCTTCAAG
GCGGCCGAAG CGCCCCTGGC CGACTTCATC TACGACCGCC TGGCCGGCAG CCTGCGCGAG
CAGGGTTATA CGGCGCAGGA AGTTGATGCC GTCGTTTCGC AGCGGCCGCA ACGCCTGGGC
GACATCCCGA AGCGACTGGC TGCCGTGCGC GCCTTCTCGG GTCTGCCGGA ATCCGCCGCC
TTGGCCGCAG CCAACAAGCG GGTCGGCAAC ATCCTGAAGA AGGTCGAAAA CGCGGTCGAG
GCCGTGGTTG ACAATGCGCT GCTCAAGGAA GCTGCCGAGA TCGCACTGCA CGACGCCCTG
GTCGAAGTCG TGCCGCAGGC CGACGCTGCC TTTGTCACCG GTGACTACAG CGAATCGCTG
CAGGCCCTGG CCGCGTTGCG GGCGCCGGTC GATGCCTTCT TCGATGACGT GATGGTCAAT
GCCGAAGACC CGGCCCTGCG CGCCAACCGT CTCGGCCTGC TCGCCAAGCT GCATGCGGCG
ATGAACCAGG TCGCCGACAT CTCCAAGCTG TCCGCCTAA
|
|---|
| Protein sequence | MSSKNLLVEL FVEELPPKAL KKLGEAFSAA LANSLKNAGL APATASITAY ASPRRLAAHV
TDVAAVAADK PVAQKLMPVA VGLDAAGNAT PALLKKLAGL GIDADAAASV VASLRRENDG
KADVLFFDSL AKGATLAEGL QKAIEAALAA LPIPKVMTYQ LQDGWSSVNF VRPAHGLVAL
HGGDVVPVAV LGLNAGRETH GHRFEATVDP VVFANADEYA SKLATDGAVI ASFAERRAEI
ARQLEGAAAK AGQATGAALR PIDDEALLDE VTALVERPNV LIGQFEQEFL AVPQECLILT
MKANQKYFPL LDATGKLTNK FLVVSNISPE DASAVIGGNE RVVRPRLADA KFFFDQDRKK
SLESRVIGLS KVVYHNKLGT QGERMQRVAA IARAIGESLG GEALALHAEQ AAVLAKADLL
TDMVGEFPEL QGTMGRYYAL HDGLAAEIAD AVEDHYKPRF AGDTLPRGIV GTVVALADKL
ETLVGMFGIG QIPTGDRDPF ALRRHALGVI RMLAENNLAL PLDHLLQTAA APFASVDGFK
AAEAPLADFI YDRLAGSLRE QGYTAQEVDA VVSQRPQRLG DIPKRLAAVR AFSGLPESAA
LAAANKRVGN ILKKVENAVE AVVDNALLKE AAEIALHDAL VEVVPQADAA FVTGDYSESL
QALAALRAPV DAFFDDVMVN AEDPALRANR LGLLAKLHAA MNQVADISKL SA
|
|---|
| |