| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3474 |
|---|
| Symbol | |
|---|
| ID | 3567342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 3722263 |
|---|
| End bp | 3723417 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637681946 |
|---|
| Product | porin |
|---|
| Protein accession | YP_286673 |
|---|
| Protein GI | 71909086 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 0.00203539 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.190966 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAGA AGATTATCGC TTTGGCCATC GCTGGTCTGG CTTCTACCGC TGCTTTCGCT
CAATCCAACG TCACCATCTA CGGTGTTGCT GATGCCACCT TCGACAGCGT CAAGGCTACC
AAGGGCTCTT CCGCCTCTGA GCAAGCTGCT TTCGTTACTC GTCAGCGCGT TACTGCCAAC
TCTTCCTACA TCGGCTTCAA GGGTGTTGAA GATCTGGGCA ACGGCCTGAA GGCTGTCTTC
CAGTTCGAAA ATGGTATTAA CAACGACAAC AGCAGCGCTG GTTCTTGGAA CAACCGTGAC
TCCTACGTTG GTCTGTCTGG TGGTTTCGGT ACCGTTGTTG CTGGTAACCT GACTGGCCCG
ACCCGTGCAG TTGGCGCCAA GTACGACGTC AATCAAGGTG CAACCGGTAT CGGCGCTAAC
GCCGCTCTGC TCGGCAAGCT GGGTACCATC GCAGGTGATT CCGGCGCTTC CGCATTCGAT
CAGCGTATCT CCAACGCTGT TGCCTACGTC TCCCCGACCG TTGCTGGTTT CACGGGCGTG
ATCGGTTACT CCACCGGTCT GTCCAGCGCC GCTATCGCTG GTACTGCCGC TGCCGTGATT
GGTACGAACC GCGAAGCTAC CGGTGCAGGT GATGTTCAGT TCAACACCGC TCGCACTCTG
GGTCTCGGCT ACGCAAATGG CCCGATCTCG GTTGATTACG CCTACACCCG TGTTGGTCTG
AAGGATGCTC AAAATGACCT CCAAGACCAT CGTCTGGGCT TCCTGTTTAG CCAAGGTTGG
GGTTCTGTCG GTCTGCTGGC CGAGCGTACC TCCCTCCAGG CTACCACTGG CAACCTGACC
CAGAACGTGT TCTATGTTCC GGTTAAGGTT AATGTTGGCA AGGGCCGTGT CATTGGTCAA
TTTGGCCACG CTGGTAACGT GAAGAACACT GTTGCTTCCG AAGGTGCTAA CCACTACGTT
CTGGGTTACG AGCACGATCT GTCCAAGCGT ACCACCCTGA AGTTGGTCTA TTCCCAGATC
AACAACAAGG AAGGTTCGAA CTACGACTAC CTGTATGGCG CTGGCAATGC TAACAGCACG
GCTACCAACA CCTCTGGTGT TGCTAACGAT GCAAACGTCA AGGGTATTTC CCTGGGCCTG
CGTCACGCTT TCTAA
|
|---|
| Protein sequence | MQKKIIALAI AGLASTAAFA QSNVTIYGVA DATFDSVKAT KGSSASEQAA FVTRQRVTAN
SSYIGFKGVE DLGNGLKAVF QFENGINNDN SSAGSWNNRD SYVGLSGGFG TVVAGNLTGP
TRAVGAKYDV NQGATGIGAN AALLGKLGTI AGDSGASAFD QRISNAVAYV SPTVAGFTGV
IGYSTGLSSA AIAGTAAAVI GTNREATGAG DVQFNTARTL GLGYANGPIS VDYAYTRVGL
KDAQNDLQDH RLGFLFSQGW GSVGLLAERT SLQATTGNLT QNVFYVPVKV NVGKGRVIGQ
FGHAGNVKNT VASEGANHYV LGYEHDLSKR TTLKLVYSQI NNKEGSNYDY LYGAGNANST
ATNTSGVAND ANVKGISLGL RHAF
|
|---|
| |