Gene Daro_3344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_3344 
Symbol 
ID3568299 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp3600516 
End bp3601517 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content62% 
IMG OID637681816 
Productsecretion protein HlyD 
Protein accessionYP_286543 
Protein GI71908956 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones58 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.144623 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTATAT TTATGAGCGC AAACATTCTT CGTCCTTTGG TTTTTGGCCT TCTTTTGGTA 
TCGACTGCGG TATTTTCCGT CGAGCCGTTG CCGGTCGTTG CCGTCCAGCG GCATGCGGTC
GATCTGACTT TTCCTGCCGA ATCGCTGGTT GAAGCTGTCC AGCAGGCGAC GGTTGGCGCC
CAGTTGGCGG GCCGGGTGCT GGAAGTGAAG GCCGATGCCG GGCAGTCCGT GAAGAAGGGC
GATGTGCTGA TGCGTATCGA TGCCCGCGAA GCGGCTGAGG CAGCGCGGGC GGCTGAGGCG
CAGTACGCCA ATGCCAAAGT CAGTTACGAA CGGACGAAAA GCTTGGTGGC GCAGAAATTC
ATGAGCGGTG CCGCGCTCGA CAAGGCCAAG GCCGATTTTG ATGCAGCCGC CGCCAATCGC
TCGGCGGCCG GGGCCAGTCA GAGTCATGCA ACCATCGTTG CGCCGATCAC CGGCATTGTC
GCCCGTCGCC ATGCCGAACT GGGTGATATG GCCATGCCCG GTGTGCCTTT GTTCACCATT
TATCAGCCGG GAAGCCTGCG GGTTACGGCC AGTATTCCGC AGCATCGCCT GAAGGAGATG
CGCTCCGTGA AAACGGCGCG GGTCGAATTT CCGGAGCTGG GCAAATGGGT CGACTCAAAT
AGCGTTCAGT TGCTGCCGAC CGCCGATGCT TCGACCCATG TTTCGCAGGT GCGCGTCAGC
TTGCCGGATG TGGCGGATGC GATGCCTGGC ATGTTCGCCC GCGTTCATTT CGTGACCGGT
CAGGCGGAAA AACTGACGGT GCCGGCTGTC GCCGTGCTCC GCCGTGGCGA AGTAGCGGCG
GTCTATGTGC AAACCCCCGA CAACCGTCTG AGCCTGCGCC AGCTGCGTCT GGGCGATACC
GTCGGGCAGG GCGAGATCGA GGTGCTGGCC GGCCTGGCCA GTGGCGACAA GGTGGTCACC
GATCCGGTCA AGGCCGCCAT CCAGCTCAAG TCAGGTCAGT AG
 
Protein sequence
MLIFMSANIL RPLVFGLLLV STAVFSVEPL PVVAVQRHAV DLTFPAESLV EAVQQATVGA 
QLAGRVLEVK ADAGQSVKKG DVLMRIDARE AAEAARAAEA QYANAKVSYE RTKSLVAQKF
MSGAALDKAK ADFDAAAANR SAAGASQSHA TIVAPITGIV ARRHAELGDM AMPGVPLFTI
YQPGSLRVTA SIPQHRLKEM RSVKTARVEF PELGKWVDSN SVQLLPTADA STHVSQVRVS
LPDVADAMPG MFARVHFVTG QAEKLTVPAV AVLRRGEVAA VYVQTPDNRL SLRQLRLGDT
VGQGEIEVLA GLASGDKVVT DPVKAAIQLK SGQ