| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3099 |
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| Symbol | |
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| ID | 3568496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 3339779 |
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| End bp | 3342895 |
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| Gene Length | 3117 bp |
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| Protein Length | 1038 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637681570 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_286299 |
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| Protein GI | 71908712 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.754272 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTCGG CAAAACAGGT CACCCTTGTT ACATTAATTC GACTTTGTAT CGCGTTTGGC
CTTTGGCTGT TTCAGCCTGC CTACGCCAGC GACAGCAATA CCGTACGTAT CGGCGTACTG
GCGTTCCGCG ACGTTCAGGC CACGGAACAA CAATGGTCTG CGCTGGGCGC TTATCTCACT
GAAGCAATCG GTGACCATCG CTTCATCGTC GTACCGATGT ACCTAGATGA TCTCAGTGCG
GCGGCAGCGA GCGGAGAAGT CGATTTCGTT CTGACCCAGC CCGAACATTA TGTGCTGCTC
CGGGCGCGCC ATGGCTTGGC GGCTGTCACA ACGCTGACGA CCCTCGCCGG AGGGCAGCCG
GTTTCAAAAT TTGGTGGCGT CATTTTTACT CGGGCAGACA GAAGCGACAT CAATAGCCTG
GCCAACCTGC GCGGCAAGGT GGTGGTGGCC ACACACCCGA ATTCCTTCGG CAGCTACCGA
ATCCAGCAAT GGACCCTGTT GCAGGCCGGA CTGAGGCTCC CGGGCGACCT GAAACAGCCG
ATTTTCACCG GCCCACCTCA AGACAACGTG ATTGAAATGG TGCTGGATGG CAAGGCCGAT
GCCGGGTTCA TCCGTACAGG CCTGATCGAA GCACTGGCAA GTGAAGGGCA CCTGGATCCG
AGCCGCTTGA AGCTGATCAA CCCACAGCAG GTGAAAGGCT TCCCCCTGTT GCTCTCCACA
GAACTGTTCC CGGAATGGCC ATTCTCGGCG GTTCGTGACG TCCCGGAGCC GCTGATCAAG
GCGGTTACGC TGGCCTTGCT GAAAATTCCC CCGGACCATC CGGTAGCGAC CAAAGGCAAG
TTTCATGGTT TTTCGCCCCC AGCCGATTAC AGTGGCCTGG AGTCGGTGAT GCTTGAGCTA
AGAGCTCACC CGGACCGACT TGAGCATTTC GATGCACAGG ACATCGTCGA TAAATACTCG
ACTCAGGTCG TTGGCGGGCT GAGTACGCTA CTGATCCTGA GCATGCTCGC CGTGGCCTAC
CTGATCCGCT CAAAGCGCCT GGTCGGCGCG GCTCTGCGCG AACGAGCCAG CCTGCTCGAT
AGTTTGGGTG AAGGCGTGTA CGGCATTGAT CAGAATGGTC AGTGCACCTT CATTAATCCG
AAAGCACTGG AAATGCTTGG CTGGACAGCG GATGAAGTCA TCGGCTCCGA TCAGCACGCC
CGCTTCCACC ATCACCGGCC AGATGGATCG ATCTATCCAA GTGCCGACTG CCCAGTCTAT
CAAACCCTGC GCGATGGCCA GCGGCGCCAG GGCGAGGAAT GGTTTTTCAA TAAAGATGGC
CGAGGCTTCC CGGTTCAATA TTCAGTCACG CCAATCTCAA GACAAGAAGA CAAGGAAGGT
GCCGTTGTCA CTTTCCGTGA CATCTCGGAA GCCCGCAAGG CCGACGAGTT GATGCGCATC
GCGGCCATTG CTTTCGAAAC CCAGGAAGCA ATGTTGGTCA CCGATGCCAA GAGCCAGATT
CTCAGGGTCA ACCGGGCCTT TACCGAGGTC ACCGGCTACA GCGCTGCCGA GGCCATTGGC
CAGACGCCTG CGCTACTGAA ATCCGGTTAT CACGAGGACA GTTTCTATAA GGATCTTTGG
ACATCGCTGA AGGAAAACGG CCTCTGGCGT GGCGAGATAT GGAATCGCCG GAAAAATGGC
GAAATCTATC CCGAATGGCT GACCATTTCA GCCGTACGTG GACAGCACGG CGAAATCACC
CACTTCGTTT CCTCTTTTCT TGACATCACC AAGCGGAAGG AAGCCGAGGA GCAGATTCAG
TTCCTGGCAC TGTACGACCC ACTCACCCAT CTTCCCAATC GCCGCCTGCT CAATGAGCGC
CTGAGCAAGG CACTGACCTC AAGCGGTCGG CAACGGCGCC ATGCGGCCCT GCTTTTCATC
GACCTCGATA ATTTCAAGAT GATCAACGAT TCAATGGGCC ACGACATCGG TGACCTGCTC
CTTCGTCAGG TTGCCCTGCG GCTGCGGGAA TCGGTGCGCA GCAACGATAC GGTTTCCCGT
CTGGGTGGTG ACGAGTTCGT GATCCTTCTC GAAGAACTAA GCCCGAACAT TCACGATGCC
ACCACCCAGA TCGAGCACAT CGCGCAGAAG ATGCTTGACT CGCTGGTGCA GCCTTACAAA
TTTGGCGAGT TTTCCCACCA TTGCACCGCC AGCATCGGGG CAATTCCGTT CATGGATGCC
ACGGAAACCA TCGAGAGCCT GTTGAAATCT GCGGATATGG CCATGTACAA AGCCAAGGCG
GCGGGCAAGA ACAGACTCTT CTTCTTCGAT CCGGCGATGC AGACGGAGGT CGAAGCCCGC
GCTGCACTTG AGCGTGACTT GCGGCAAGCA CAGCGTGAAA AGCAGTTTGT TCTCTATCTG
CAACCCCAGG TTGACCAATC CGGCCATGTT TCTGGCGCGG AGGCATTGAT TCGCTGGCAG
CACCCGACCC ACGGACTGAT CTTGCCGGGC GAATTTACCC ATGTCGCCGA AGAAACACGA
CTCATCCTGC CCATCGGCCA ATGGGTTCTG GAGGAAGCTT GCAAACAGCT GGTTATCTGG
CAGAAAAATC CTGATACGGC GCATCTGACA CTGGCCATCA ACGTCAGCGC CTTGCAGTTC
CGTAACCCGG ATTTTGTCGA TGATGTGGCG CGAGCCATCC ATGAATCAGG CGCCCTGGCC
AGCCGCTTGA AACTTGAAAT CACTGAATCA CTATTGCTCG AAGATATTGA CGGCACCATC
GAACGCATGC AGGTGCTGAA GAATCAGCTG GGCGTCGGCC TGTCACTTGA CGATTTCGGA
ACAGGCTATT CCTCGCTGAG CTACCTGAAA CAGCTGCCGC TTGATCAAAT CAAGATTGAT
CGCAGTTTCG TCAAGGATAT TCATTGCAAC CCGAACGATG CCGCGATTGC CGAGGCCGTC
ATTGCACTTG GCCGCTCCTT CTCGCTGAAC GTCATCGCCG AGGGAGTGGA AACCATTGAG
CAGCGGGATG CGTTGATCGC ACGGGGCTGC CTGACTTTCC AGGGCTATCT GTTCGGACGC
CCCGGCCCGA TTGACGCTTT CCCCGCCTGC CGGCCGCCTC AGCGCAATTC CCAGTAA
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| Protein sequence | MRSAKQVTLV TLIRLCIAFG LWLFQPAYAS DSNTVRIGVL AFRDVQATEQ QWSALGAYLT
EAIGDHRFIV VPMYLDDLSA AAASGEVDFV LTQPEHYVLL RARHGLAAVT TLTTLAGGQP
VSKFGGVIFT RADRSDINSL ANLRGKVVVA THPNSFGSYR IQQWTLLQAG LRLPGDLKQP
IFTGPPQDNV IEMVLDGKAD AGFIRTGLIE ALASEGHLDP SRLKLINPQQ VKGFPLLLST
ELFPEWPFSA VRDVPEPLIK AVTLALLKIP PDHPVATKGK FHGFSPPADY SGLESVMLEL
RAHPDRLEHF DAQDIVDKYS TQVVGGLSTL LILSMLAVAY LIRSKRLVGA ALRERASLLD
SLGEGVYGID QNGQCTFINP KALEMLGWTA DEVIGSDQHA RFHHHRPDGS IYPSADCPVY
QTLRDGQRRQ GEEWFFNKDG RGFPVQYSVT PISRQEDKEG AVVTFRDISE ARKADELMRI
AAIAFETQEA MLVTDAKSQI LRVNRAFTEV TGYSAAEAIG QTPALLKSGY HEDSFYKDLW
TSLKENGLWR GEIWNRRKNG EIYPEWLTIS AVRGQHGEIT HFVSSFLDIT KRKEAEEQIQ
FLALYDPLTH LPNRRLLNER LSKALTSSGR QRRHAALLFI DLDNFKMIND SMGHDIGDLL
LRQVALRLRE SVRSNDTVSR LGGDEFVILL EELSPNIHDA TTQIEHIAQK MLDSLVQPYK
FGEFSHHCTA SIGAIPFMDA TETIESLLKS ADMAMYKAKA AGKNRLFFFD PAMQTEVEAR
AALERDLRQA QREKQFVLYL QPQVDQSGHV SGAEALIRWQ HPTHGLILPG EFTHVAEETR
LILPIGQWVL EEACKQLVIW QKNPDTAHLT LAINVSALQF RNPDFVDDVA RAIHESGALA
SRLKLEITES LLLEDIDGTI ERMQVLKNQL GVGLSLDDFG TGYSSLSYLK QLPLDQIKID
RSFVKDIHCN PNDAAIAEAV IALGRSFSLN VIAEGVETIE QRDALIARGC LTFQGYLFGR
PGPIDAFPAC RPPQRNSQ
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