| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2906 |
|---|
| Symbol | |
|---|
| ID | 3566253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 3129394 |
|---|
| End bp | 3130185 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637681375 |
|---|
| Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
|---|
| Protein accession | YP_286106 |
|---|
| Protein GI | 71908519 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
|---|
| TIGRFAM ID | [TIGR02925] peptidyl-prolyl cis-trans isomerase, EpsD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 0.175953 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.376466 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAAC TCTCCCGCCT GGCCGCCCTG CTTGTCGCCG GCGCCATCGT TTCCGCTCCG
GCCCTCGCTG CCGACAAGGC CAAGGCTTTC GCCACCGTCA ATGGCCAGCC GATTTCGCAA
ACCGTCTACA ACGCCTTCAT CGCCGAACAG CAGGCGCAGG GCGCACCTGA CTCACCGGAA
CTGCAAGGTG CCGTCAAGGA AGAGTTGGTC CGCCGCGAAA TCCTCGCCCA GGAAGCCAAG
AAAAAGGGCC TGGACAAGGC CCCCAACGTC CAGGGTCAGA TCGAACTCGC CAAGCAGGCC
GTGCTTATCC GCGCCTACCT GTCCGACTAC GTCAAGGCAC ACCCGATCAG CGACGCCCAA
CTCAAGGCCG AATACGAGTT GATCAAGAAC AACCTGGGCA GCACCGAATA CAAGGCTCGC
CACGTGCTGG TCGAAAAGGA AGATGACGCC AAGGCAATCA TTGCCAAGCT GGACAAAGGC
GAAAAGTTCT CCGAACTGGC CAAGCAATCC AAGGATCCGG GCTCCAAGGA CAAAGGTGGC
GAACTGGGCT GGAGCTCCCC GAACGCCTAC GTCAAGCCGT TCGGCGAAGC GCTGGGCAAG
CTGAAGAAGG GCGAATACAC CAAGACGCCG GTCAAGTCCG ACTTCGGCTA TCACGTGATC
CAGCTCGACG ACTCCCGTCC GATGACCCCG CCGCCGTTCG ACCAGGTCAA GCCGCAACTA
CAGCAGCGTG CTGGCCAGCA GCAGGTCGAG AATCTGGTCA AGGAACTGCG CGGCAAGGCC
AAGGTCGACT AA
|
|---|
| Protein sequence | MFKLSRLAAL LVAGAIVSAP ALAADKAKAF ATVNGQPISQ TVYNAFIAEQ QAQGAPDSPE
LQGAVKEELV RREILAQEAK KKGLDKAPNV QGQIELAKQA VLIRAYLSDY VKAHPISDAQ
LKAEYELIKN NLGSTEYKAR HVLVEKEDDA KAIIAKLDKG EKFSELAKQS KDPGSKDKGG
ELGWSSPNAY VKPFGEALGK LKKGEYTKTP VKSDFGYHVI QLDDSRPMTP PPFDQVKPQL
QQRAGQQQVE NLVKELRGKA KVD
|
|---|
| |