| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2850 |
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| Symbol | mnmC |
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| ID | 3566412 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 3067200 |
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| End bp | 3069134 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637681319 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_286050 |
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| Protein GI | 71908463 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 0.413253 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.437245 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAAAAAC TGCAGCCTGC GAGGCTCGAA TTCGTCGCCT ACGACACACC CTACTCGGCG
GCCTTTGACG ACGTTTATCA CTCGGCCCTC GGCGGACCAG CCCAGGCCCG GCATGTCTTC
CTGGCTGGCA ACGAACTACC GGCGCGTTGG CAGGATAAGT ACCGTTTCGT CATCCTCGAA
ACCGGCTTCG GCACCGGGCT AAATTTCCTG GCCACCTGGC AGGCCTGGCG GGATGATCCG
CAGCGCTGCC GACGCCTGCA CTTCATCTCC TTCGAGAAGC ACCCATTCAC GCTGGCGGAC
CTCGCCACCT GCCAGCAAGC CTGGCCGGAA TTCGCCGAAC TGGCGGCCGA ACTGCAGCAA
AAATGGCCGC CGTTGGTGCC GGGCATGCAC CGGCTCCATC TCAACGACGG ACAGGTGATC
CTGACCCTGA CCTTCGGGGA TGCGGCAACG CAACTGCGCT CAATCGATGC CTCGGTCGAT
GCGTTTTTCC TCGATGGCTT CTCTCCGCCC AAGAACCCCG AACTGTGGTC ACCGCATTTC
TGCAAAGGCC TCGCCCGCCT GACAGCACCG GGTGCCACGC TGGCCACCTG GTCGGTCGCT
GGCCACGTCC GTCAGGCGCT CAAGGACGCT GAATTCGATG TGGCCAAACG TCCCGGCTAT
ATCGGCAAGC GGCAGATGCT GGTCGGCCGC TTCCGCTCGC GTCGCCCGGA TCGCCATGTC
GCTCCGACCG ATCGCCGGGC CATCGTCATC GGTGCCGGCA TTGCCGGAAG CAGCACGGCC
CATGCACTGG CTGCCGCTGG CTGGCAGGTG ACGGTGCTAG AGCAGGCCAC CGCACCGGCC
ACTGGCGCCT CGAGCAACCT GGCCGGCATG CTGCGCCCCT TGCCCAGCGC CGACGACAAC
CGCCTTTCCC GCATCACCCG CGCCGGGTTT CTGGCCACCC GCGCCCTGCT TGCCGCGCTA
CCCGAAGCCC GCTGGTCGCC CTGCGGCGTG CTGCATCTGG CACGCGAACC GGAACACGAA
GGCCAGCAAA GACGGGCCGT CGAGCAGCTT GGCTTCCCGC CCGAAGTGCT GCAATTCGTC
GAGTCCGACG AAGCAAGCCG CCTGCTCGGA CAGCCGGTCA CCATCGGCGG CTGGTGGTTC
CCGAACGGTG GCTGGGTACA GCCGCCCTCG GTCTGCCGGG CCGCACTGGC CGCCTTTCCC
GAGCGCATCA CGACGCACTT CAATGCCGCA GTCGCCCGGA TCGTTCGCCA AAACGATCAA
TGGCAGGCCC TCGACGCCAA TGGCAACTTG CTGGCGGAAG CGCCCGTACT GGTCATGGCC
AGCGGGGCTG CCGCCCCGCG TTTCGAACAG TTTGCCTGGC TACCCCAGCG TTCCGGCCGC
GGCCAGGTCA GCCACCTGCC AGCGAGTGTC GGCAAGCCGC TGAATACCGT GCTCTTCCAG
ATCGGCTACA CCATACCCGC CATTGACGAC ACACAACTAA TCGGTGCCTC GCTGTCTTAC
GAAGATGATG AGTCCGCCGA ACGCGAGGCA GATCACCGCG ACAATCTGGC CCGCCTGCGC
CTGACCCTGC CGGATTTTGC GAGCGACCTC GACCCGGCCA CCCTGCATGG CCGTGTCGGC
TTCCGCCCGA TGTCGCCGGA CCGGATGCCG ATCGTTGGCG CCGTGCCGGA TACCATGACC
GCAACGCCCA ACACCCGCCT CCACAACATT CCCCGTCAGC CCGGCCTGTG GTGTGTCCAG
GGTTTTGGTG CTCGTGGCAT CGTCTGGTCG GCACTGATGG CCGATCTGCT GGTCAGCCAG
CTGGAAGGCG AACCGCTCCC TCTGGAAAGA GACCTCGTCG ATGCGCTCGA CCCCGGTCGC
TTCCTGATCA AAGCGGCGCG CAACTCTGGC GGAGAATTGC CCTCTGACGA AGAGACGAGC
GAACCAGCTG CATAA
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| Protein sequence | MEKLQPARLE FVAYDTPYSA AFDDVYHSAL GGPAQARHVF LAGNELPARW QDKYRFVILE
TGFGTGLNFL ATWQAWRDDP QRCRRLHFIS FEKHPFTLAD LATCQQAWPE FAELAAELQQ
KWPPLVPGMH RLHLNDGQVI LTLTFGDAAT QLRSIDASVD AFFLDGFSPP KNPELWSPHF
CKGLARLTAP GATLATWSVA GHVRQALKDA EFDVAKRPGY IGKRQMLVGR FRSRRPDRHV
APTDRRAIVI GAGIAGSSTA HALAAAGWQV TVLEQATAPA TGASSNLAGM LRPLPSADDN
RLSRITRAGF LATRALLAAL PEARWSPCGV LHLAREPEHE GQQRRAVEQL GFPPEVLQFV
ESDEASRLLG QPVTIGGWWF PNGGWVQPPS VCRAALAAFP ERITTHFNAA VARIVRQNDQ
WQALDANGNL LAEAPVLVMA SGAAAPRFEQ FAWLPQRSGR GQVSHLPASV GKPLNTVLFQ
IGYTIPAIDD TQLIGASLSY EDDESAEREA DHRDNLARLR LTLPDFASDL DPATLHGRVG
FRPMSPDRMP IVGAVPDTMT ATPNTRLHNI PRQPGLWCVQ GFGARGIVWS ALMADLLVSQ
LEGEPLPLER DLVDALDPGR FLIKAARNSG GELPSDEETS EPAA
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