| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2712 |
|---|
| Symbol | |
|---|
| ID | 3566920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 2906111 |
|---|
| End bp | 2907328 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637681179 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_285912 |
|---|
| Protein GI | 71908325 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 0.620726 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00485368 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TTTCAGCCGT CATCAGCGGC ATCGCACTCT GCATCTGCAC CCAAACTGCA
CCGGCAGCAG AGCCCATCCG GATCGCCGTG ACTGGCCCCT ATTCGGGTCC CTCATCACCG
ATGGGCCAGT CCATGTTGGC TGGTGTCCGC CTGGCGATCA GCGAAATGAA TCTGGGTGGC
GGGCTGCTCG GGCGCCAACT GGTCCTGGTC GAAAAGGATG ACAAGGGGGA TCCGGCAACC
GGCAAGGAGG TGGTCGAGGC AGCCATTCGC CAGGACAAGG TGGTGGCCGG ACTCGGCGTG
GTCAACACCG GCGTCGCACT GGCCTCGCTG AAGGACTATC AGGACGCCCG TGTGCCAGTC
ATCGTCAATG TCGCCACCGG CAGCTCGGTG GCCCGGCAGT TTTTCCCCCC CGCCATCCCG
GACAGCTACG TTTTCCGCAA CTCGGCCAGC GACGACATCC AGGCTGCAAT GATCGTGCGC
GAAGCGGTCA AGCGTGGCCG CTACACCAAG CTCGCCATCC TCCACGACAG CACGCCCTAT
GGCGAACAGG GGCGCGACCA ATTGACCCGG GAACTTACCG CTCTCGAGCT CAAACCCGTG
GCAGTCGAAA GTTTCGCCCC CGGCACCAGG GATCTTGCCG CCAACCTGCA GCGAGCCCGC
GAGGCCGGTG CCGAGGCGAT CCTGACCTAT GCCATCGGCC CGGAACTGGC CGTCATTGCC
AACAGTCGGG CCAAGATGGG CTGGAAGGTG CCGATGATCG GCAGCTGGCC GTTGTCTCTG
CCCAACTTCA TCGACGCAGC CGGCAAGAAT GCGGAAGGCG CGCGCATGCC GCAAAGTTTC
GTCGAGGCAG CGAACAACTA TCGCCGTACT TCCTTCATCA GCGCCTACCA TCATGCCGAT
GGCAGCAAAC GCATTCCCTC GGCGGTCTCT GCCGCCCAGG GTTACGACTC GGCTCTGCTA
CTGATAGCGG CCATCAGCCA GGCCGGCAGC ACCGAAGGCC CGAAAATTCG CGCCGCGCTG
GAAAACCTGC AAAAGCCTGT CTACGGCGTG ATCACGACTT ACTCACCGCC GTTTTCGAAA
GACGACCACG AGGCGATCAG CGAAAACATG GTGCTGATGG GTGAGGTAAA ACAGGGGCAG
GTTGCTTTCG CCCACCCGGA TGACGAAAAG CGCAGCCTCC TCGTCCACCG CAAGCCGAAA
GTTCAGCCGG TCAATTGA
|
|---|
| Protein sequence | MKKISAVISG IALCICTQTA PAAEPIRIAV TGPYSGPSSP MGQSMLAGVR LAISEMNLGG
GLLGRQLVLV EKDDKGDPAT GKEVVEAAIR QDKVVAGLGV VNTGVALASL KDYQDARVPV
IVNVATGSSV ARQFFPPAIP DSYVFRNSAS DDIQAAMIVR EAVKRGRYTK LAILHDSTPY
GEQGRDQLTR ELTALELKPV AVESFAPGTR DLAANLQRAR EAGAEAILTY AIGPELAVIA
NSRAKMGWKV PMIGSWPLSL PNFIDAAGKN AEGARMPQSF VEAANNYRRT SFISAYHHAD
GSKRIPSAVS AAQGYDSALL LIAAISQAGS TEGPKIRAAL ENLQKPVYGV ITTYSPPFSK
DDHEAISENM VLMGEVKQGQ VAFAHPDDEK RSLLVHRKPK VQPVN
|
|---|
| |