| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2453 |
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| Symbol | nusA |
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| ID | 3568226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 2654472 |
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| End bp | 2655944 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637680921 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_285658 |
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| Protein GI | 71908071 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.0000540151 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.905596 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCCGTG AAATTTTGCT GCTGGTCGAT GCTCTGGCCC GCGAAAAAAA TGTCAGCAAG
GAGATCGTCT TTGGCGCCCT TGAGCTGGCA CTCGCGTCAG CGACCAAAAA GCGCATCAAT
GACGAGGCCG ATGTTCGTAT CTCAATCGAT CGCGACACTG GTAGCTTCGA ATCATTCCGT
CGCTGGCAGG TTGTGCCGGA TAACGAATAC GTCAACGAAT TCCTCGAAAT TCCGTTGTCC
GATGCCCAGA AGGATGATCC TGAAATCGAG CCCGGCGACT CTCTGGAAGA GCCGCTTGAG
CCGATCGATT TTGGTCGTAT CGGTGCTCAG GCTGCCAAAC AGGTTATTTT GCAGAAGATC
CGCGACGCCG AGCGCGAGCA GATTCTGGCT GACTTTCTTG GTCGCGGCGA GCATGTCGTT
TCCGGTACCA TCAAGCGCAT GGAGCGTGGC AACGCCATTA TTGAGGCTGG TAAAATTGAA
GCCATGCTGC CGCGCGACCA GATGATCCCC AAGGAAAATC TGCGTGTCGG CGACAGAGTT
CGTGCCTATT TGCTGCGCAT TGATCGCAAT GCCCGTGGTC CGCAAATCAT CCTTTCGCGC
ACCGCTCCGG AATTTGTCAT CAAGCTTTTT GACATGGAAG TGCCGGAAAT TTCCGATGGC
CTGATGGAAC TCAAGGCCTG TGCCCGTGAC CCCGGTCTGC GCGCCAAAAT CGCTGTCAAG
TCGAACGATC CCCGTGTTGA TCCAATCGGT ACCTGCGTCG GTTTGCGCGG TTCCCGGGTT
ACCGCCGTTC GTAACGAAAT CGGTGGCGAG AATATCGACA TCGTGCTGTG GTCAGCCGAT
CCGGCGCAAT TCGTTATCGG CGCGTTGTCG CCAGCTGAAG TGTCCTCCAT CGTGGTTGAT
GAAGAAAAGC ACGCAATGGA TGTCGTGGTC GACGAGGATA ACCTTGCGAT CGCCATCGGT
CGCAACGGGC AGAACGTTCG CCTGGCCTCC GAACTGACTG GCTGGACCAT CAATCTGATG
ACGCAGGACG AGTCGGCCAA GAAATCCGAA GCCGAATTCG CCGAGACGCG CGTCGTCTTT
ATGGAAAAGC TGGATATCGA TGAAGAACTT GCCGATCTGC TGATCGAGGA AGGGTTCTCG
ACGCTGGAAG AAGTGGCCTA CGTGCCGCTG GCAGAAATGC TGGAAATCGA AGGTCTGGAT
GAGGAAATCG TAAATGAGTT GCGTAATCGG GCTCGTAACG TCCTGCTCAC CGAGGCTATC
GCAACTGAAG AAAAGCTGGA AAGTGTTTCC GAAGACCTGA TTGGTCTCGA AGGCATGAGC
AAGGAACTGG CCGCCAAACT GGCTGGACAC GATGTCAAAA CCCGGGATGA TCTCGCGGAA
TTGGCTGTTG ATGAATTGAC GGAAATGACC GGCATTGACG ATGAGCGTGC CAAGGATCTT
ATCCTGAAGG CACGGGCTCA CTGGTTCGAG TGA
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| Protein sequence | MSREILLLVD ALAREKNVSK EIVFGALELA LASATKKRIN DEADVRISID RDTGSFESFR
RWQVVPDNEY VNEFLEIPLS DAQKDDPEIE PGDSLEEPLE PIDFGRIGAQ AAKQVILQKI
RDAEREQILA DFLGRGEHVV SGTIKRMERG NAIIEAGKIE AMLPRDQMIP KENLRVGDRV
RAYLLRIDRN ARGPQIILSR TAPEFVIKLF DMEVPEISDG LMELKACARD PGLRAKIAVK
SNDPRVDPIG TCVGLRGSRV TAVRNEIGGE NIDIVLWSAD PAQFVIGALS PAEVSSIVVD
EEKHAMDVVV DEDNLAIAIG RNGQNVRLAS ELTGWTINLM TQDESAKKSE AEFAETRVVF
MEKLDIDEEL ADLLIEEGFS TLEEVAYVPL AEMLEIEGLD EEIVNELRNR ARNVLLTEAI
ATEEKLESVS EDLIGLEGMS KELAAKLAGH DVKTRDDLAE LAVDELTEMT GIDDERAKDL
ILKARAHWFE
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