| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2385 |
|---|
| Symbol | |
|---|
| ID | 3568599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 2570383 |
|---|
| End bp | 2571459 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637680852 |
|---|
| Product | rhomboid-like protein |
|---|
| Protein accession | YP_285591 |
|---|
| Protein GI | 71908004 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCAC TTCACGATCA GCTTCGCCAT GCCATGCCGC AATTGCACCT GACGCCGCTG
CTGATCGCGG CTAACGTCCT GATTTTCGTG GCGATGTTGC TCAATGGCGC AAGTCTGTGG
CATGCGCAAA ACACCATCCA GCTAGCCTGG GGCGCCAATT TCGGGCCTGC AACACAGGAT
GGAGAATGGT GGCGCCTGGG TAGTGCGCTC TTTCTGCATT TCGGTATCCT GCACCTGCTC
CTGAACATGG CGGCTTTGTG GGATGTCGGT CAGTGGGTCG AGCGCATGTA CGGCACCCTG
CGATTCGCGG TGATCTACCT GACTGCCGGC CTGACCGGAA ATCTACTGTC GCTGGTGGCG
AATGCCGGGG CAGCCGTGTC CGGAGGAGCA TCCGGCGCCA TTTTCGGCAT TTACGGTGCG
CTACTCAGTT ATCTGTGGCT GGAACGTTCG AGTATCCATC GCGGCGAGTT CCGCTGGTTG
TTCTGGGCCG CGATCGGTTT TTCCGGGGCG ACTATTATTT TCGGATTGCT GGTTCCCGGC
ATCGACAATG CCGCCCACGT TGGTGGATGG ATTGCCGGTG TTCTGATGGG CGTGCTGCTG
ATCAGGTCCG AGCCTGGCAT TGTGGCCGGG CCTCAACTTG GTAGATGGGT GTCGGGGCTG
TTTTTTCTCT TTCTCGTCGC GGTTATCGTG GGCCAGATTC CAAAGCCAGC CTATCGCTGG
AGCGAAGAAA AGCAGATTCG CGGGGAGGTC TTCGAGTTCC TTCAGGAAGA TGCGGCGATT
ACTCGAAATT GGGACAATCT TTTGTGGCAA GGCGGCAAAA AGGGTGTCTC CGCCGACGAA
CTGGCCGATG CGATTGAGAG CATGGTGGCC GAGCGATACG ACCAAAGTTT TGAGGAGCTT
TTGGCCTTAC CGATCGATGA AAATTTGCCG TCTGCGCCGA CGGTTGAACA TTTGAAGCTC
TATGCCGAAC AGCGGCGTGA CGCATCGCGG GCGATGGTCG AAGGATTGCG GGCCCGGGAT
AAATCAAAGA TCAAAAAAGC ACTGGATCAG GCGCGCCAGT CCGGCAAAGT CAATTAA
|
|---|
| Protein sequence | MPSLHDQLRH AMPQLHLTPL LIAANVLIFV AMLLNGASLW HAQNTIQLAW GANFGPATQD
GEWWRLGSAL FLHFGILHLL LNMAALWDVG QWVERMYGTL RFAVIYLTAG LTGNLLSLVA
NAGAAVSGGA SGAIFGIYGA LLSYLWLERS SIHRGEFRWL FWAAIGFSGA TIIFGLLVPG
IDNAAHVGGW IAGVLMGVLL IRSEPGIVAG PQLGRWVSGL FFLFLVAVIV GQIPKPAYRW
SEEKQIRGEV FEFLQEDAAI TRNWDNLLWQ GGKKGVSADE LADAIESMVA ERYDQSFEEL
LALPIDENLP SAPTVEHLKL YAEQRRDASR AMVEGLRARD KSKIKKALDQ ARQSGKVN
|
|---|
| |