| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2162 |
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| Symbol | |
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| ID | 3569804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 2334288 |
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| End bp | 2335715 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637680632 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_285372 |
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| Protein GI | 71907785 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 0.0722212 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTCCC CCGCTCTTTA CCGTCTGACA CCGCTGGCAC TGGCCTTTGC CCTTAGCGGC
TGCGCCATTG GCCCTGACTA CCTGCGCCCC TCGGCACTGC TGCCCAGCCT CTTCGGCGAA
GCCAAGCCAG CCGAGACGGT CGCGATTGCC CCCAACCCGG CGATTGATCC GCGCTGGTGG
ACGCTGTTCA ACGACGCCAC GCTGAACGAT CTGGTCGATC AGGCGCTAAG CAACAACGCC
AGCCTCCGCC AGGCCATCGC CCGCGTCGAA CAGGCTGAAG CCGTGGCCCG TGAAGCCGGC
GCCTCGTTCT TCCCGGAAAT CGATGGTTCG GCCGCCAGCA GCAACACCAA GGCAAGCACC
AAGACGGCCA CTTACGTCGC TTCGCAACCG GCGATTCGCC ACGCCCGCAG CGCCGGGCTC
AGCACATCGT TCGAACTCGA TGTCTGGGGC CGCGTCCGCC GTGCCAACGA AGCCGCCCAA
GCCACCCTGC TGGCCAGCCA ATATTCCCGA GACTCCATCC GGATCACGGT GGCCGGGCTA
GTCGCCAGCA ACTACCTGGC CTTACGGGCC TACGATGCCC AACTAGCCCT GACCAGCGAA
ACCCTGAAGA GCCGCGAAGA CAGCCTGAAA CTGGTGAAAA CCCGTGTCGA TGCCGGCCTG
GTATCGCCAC TCGATGGCTA CCAGGCCGAA GGCGCGCTCG CCGCCGCACA GGTGCAAATC
GCCGAACAAC GTCGGCAGCG TGCCCTGGCC GAACACCAGC TGGCGCTACT GACCGGCAAC
CCGGAACTCA AGCTCGCTGC TGGCGATCTG CGCCAACTGC CTCTGCCGCC GCTCCCCCCG
GCTGGCCTGC CCTCCGACCT GATCGAAGGC CGCCCCGATG TCCGCCAGGC CGAAGCCGAG
TTGATCGCCA CCAACGCCGG TATCGGCATC GCCAAGGCCG GCTACTTCCC GAAATTCACG
CTGACCGGCA GCATCGGCAG CGAGAGCAAG ATACTGTCCG ATCTGTTCAG CGCCGGTTCC
GGCACCTGGT CGCTCGGACT TAGCGCGCTG ATGCCCATCC TCGACTTCGG CCGCACCTCA
GCCCGCGTCG ATCAAGCCAA GGCCCTCAAC CAGCAATCCT TGATCGCCTG GCAGAATTCC
CTGCAAACCG CCTACAAGGA AGTCCGGGAT GCCCTGGTCA GCCTGCGTGA AGACGGCGAA
GCCGAAACTG CCCAAAACAT CCGCGTAGAT AGCGCCCGCA AGGCGCTTGA CGTTTCCCGC
CTGCGCTACG AAGCCGGCCA TGCTGGCTAC CTCGAAGTGC TTGACGCCCA ACGCACCCAC
AACGATGCCG TAACAACGAT GATCACCATG CGCCAAGCCA GGTTAGGTGC GGCGATTGAT
CTGTTCAAGG CGCTGGGTGG GGGGTGGAAA TCGGATGGGT TGTCTTGA
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| Protein sequence | MISPALYRLT PLALAFALSG CAIGPDYLRP SALLPSLFGE AKPAETVAIA PNPAIDPRWW
TLFNDATLND LVDQALSNNA SLRQAIARVE QAEAVAREAG ASFFPEIDGS AASSNTKAST
KTATYVASQP AIRHARSAGL STSFELDVWG RVRRANEAAQ ATLLASQYSR DSIRITVAGL
VASNYLALRA YDAQLALTSE TLKSREDSLK LVKTRVDAGL VSPLDGYQAE GALAAAQVQI
AEQRRQRALA EHQLALLTGN PELKLAAGDL RQLPLPPLPP AGLPSDLIEG RPDVRQAEAE
LIATNAGIGI AKAGYFPKFT LTGSIGSESK ILSDLFSAGS GTWSLGLSAL MPILDFGRTS
ARVDQAKALN QQSLIAWQNS LQTAYKEVRD ALVSLREDGE AETAQNIRVD SARKALDVSR
LRYEAGHAGY LEVLDAQRTH NDAVTTMITM RQARLGAAID LFKALGGGWK SDGLS
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