| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1948 |
|---|
| Symbol | |
|---|
| ID | 3567877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 2101069 |
|---|
| End bp | 2101572 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637680419 |
|---|
| Product | BadM/Rrf2 family transcriptional regulator |
|---|
| Protein accession | YP_285164 |
|---|
| Protein GI | 71907577 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator)
[TIGR02010] iron-sulfur cluster assembly transcription factor IscR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 0.00171818 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.169559 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTAA CGACCAAAGG ACGTTTTGCC GTAACGGCCA TGATGGACCT CGCCTTGCGC
GGCGATGATG GCCCGGTGGC ACTGGCCAGC ATCAGTGAGC GCCAGAAGAT ATCGCTCTCT
TATCTTGAGC AATTGTTTGG CAAGTTGCGC CGCTATAAGC TGGTCGATAG CGTGCGTGGC
CCCGGTGGCG GCTACTGCAT CGCCCGGCCA CTCGAACTGG TGCGGGTGGC TGACATTATC
CGTGCTGTCG ATGAGCAGCT TGATGCCACA CAATGCGGCG GTCGCGAAAA TTGCCACGAT
GAGCATCGGT GCATGACACA CGATCTGTGG ACAACGCTGA ATGTAAAGAT GTTCGATTAT
CTGTCTTCGG TGACGCTGGC TGATCTGGTT GAGCGCGAGA GACAAAAACG CGGTGCGGGT
GTAACAGTGC TCGAAGACAA GCGCCGCCTC GGTCCGCAGC CCCGTGGCAG CAACGGGCGT
GAAAAGATAC CTGCGGTTAT TTGA
|
|---|
| Protein sequence | MRLTTKGRFA VTAMMDLALR GDDGPVALAS ISERQKISLS YLEQLFGKLR RYKLVDSVRG
PGGGYCIARP LELVRVADII RAVDEQLDAT QCGGRENCHD EHRCMTHDLW TTLNVKMFDY
LSSVTLADLV ERERQKRGAG VTVLEDKRRL GPQPRGSNGR EKIPAVI
|
|---|
| |