| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1943 |
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| Symbol | |
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| ID | 3567872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 2094187 |
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| End bp | 2097045 |
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| Gene Length | 2859 bp |
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| Protein Length | 952 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637680414 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_285159 |
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| Protein GI | 71907572 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.102548 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCACC CAAAATTACT CAAGCTGTCC GGCCTGGGAC TGATTAGGCA GGGGCTAGGC
TTTGCCCTTC GCGCATCCGT AGCAGTCACT CTTACTGCTG CTCTTTCTGC TATCGCAGAG
GCAACACCTG AGAAAGCAGC GAGCTATTAC GAAGATGCAC TCCGCAAGTA TGAAAATAAC
GAGATGCCTG CGGCTGTCAT TCAGTTGAAA AACGCCATTC AGCAAGATCA GAAAATGCTT
GCAGCGCACC TGTTGCTCGG CAAAGCACTA CTTAAAAATG GCGATCTGAA GGGGGCTGAA
GCCGCATTTG AGGAGGCGCT CAAGCAGGGC GTCAATCGTG GAGAAGTCGC CCTGCCGCTT
GGGCAGATTT ATCTTGCACT AGGCCGCCCG GAAGCGGTTA TCGAAAAAAT ACCAGCTTCC
GGTTTGCCTC CCGCATTGCA GGTCGAAGTG CTGACCATGC GGGGAAATGC TTACTTGGAA
TCTGGCAAGA GCAGTCTTGC GGTCCAAAGT TTTGAGAATG CCAAGGCCAT TGATCCGAAG
TCGCCGCTGC CGCTCATCGC TGAAGTGCCG ATGTTGTTGG CTGCCGGAAG ACTCGATCAG
GCCAGGGAAA AGGCCAACAA GGCCGTTGAA CTGGCACCCA ATAACGGTTC GGCCTGGAAT
ATCAAAGCCT CGGTGCTGCA CGCTTCGTTT GATGCCAACG GAGCCCTGGC CGCTTATGAC
AAGGCGCTGA CGCTGGCGCC GAAACATGTT GATGCACGCA TCGCTCGTGC AGCATTGTTG
ATCGATCTGA AGCGCAATGC CGATGCTCAA AAAGATCTTG ATTACCTGAA AACCTTTGCC
GAAGATGAGC CTCGTGCGGC TTATCTTCGG GCTGTCTTGG CCAGTCTGCA CGGCGATGCC
AATGCGACAA ACGCAGCGCT TAAAGAGGTG ACGCGGACCG TCGACAGTCT TCCTCCTGCC
TGGTTGGCGC GGCGCGAGCA ATTGTTGATG GCGGCCGCTT TGGCGCATTA CGGCCTGGGT
AGCCACGAAA AGGCGCGTGA GTATCTGGAT GCGCTCATTG CGCGCAGCCC AAGTAATCTG
GGGGCAAAAA AATTACTGGC TTCGATTTAT GCCGATGCAA AGGATTACGG TCGTGCTCAG
ACTTTGCTCG AATCCCTGCA AAGAGCTACG CCGGACGACC CTCAGGTGAT GTACCTGCTG
GGAACGGTCA ATCTCGCCCA ACGACGCTAT GCGCAAGCGA CAGACCTTCT GGAAAAGGCT
GCAACTCGCA CCGGTTCCCC CGACATGAAC CGCTCGCTGG GCTTGAGCCA GCTTGGTCTG
GGACAGGCCG AGAAAGGGCT GGCCAGTCTG GAAAAGGCAT TTTCCGCCAA CCCGGCTGAT
TTTCGTGCTG GGATGGCCCT GGCTACGCTT TACATGCGCC AGGCCAAGAA AGACAAAGCG
ATGAAAACCG CGGAGGCAAT GGTCAAACAG GACTCGGCGA ATCTGACGGC ACTGAATTTT
CTGGGGACGA TCAAGGGCGC AAGTGGAGAC AAAGCAGGGG CGCGTAGTGC CTATTTGCAG
GTGCTTGCCA AAGATGCCGC TTTTGCCCCC TCTGTTCTGA ATCTGGTACG TCTGGACATC
GGTGAAAAGC GCTTCGATGA GGCACGTCGC CGTCTTGATG CTTTATTGAA AAAAGACAGT
AACGATTATC AGGTGCTGTT CGAGTACGGC CTGCTTGAAC AACGGGCTGA GCGCCCGGCC
GAAGCCATTC GTCATCTGAC CAAGGCGGGT GATGTCCAGC GTACTGATCC TGGTCCGACC
TTGGCGTTGA TTGATCTGTA CCTCAATCAA CGCCAAGGAG AACAGGCGCT CAAGGCAGCC
AAGGCCCTGG TTAGCAAGTT CTCGACAAGT CTGAGGGTGC AACAGGCCTT GGCACGGACC
TACCTGGCCA CAGGGGATGC TGTAAATGCC CGTAACGTAC TGACGACCGC AACGCGCCTA
GCTGAATTTG ATCCGAAGGC CCAGGTCTCG ATCGCGCGTA TGCAGTTGGC GGCCGCCAAC
CCTAACGGCG CTGCCTACAG CGTTTCCAAG GCCCTTCAGG GAAATCCGGA TGATGTCGCT
GCGCTCGCGC TGGCGGTCCA GGTTGAAGCG CGGCGCGGTG ATTCAGGCAA GGCTGATGTG
GCCCTCAGGA CGTTGACTTC AAAGCACCCG AACGACGTCG AGACGATTCG TGCCGGCGCA
GAATTGGCCA TGATGCGCGG CCAGTATCAG GCTGCAGTCA CCGGCTATCG CAAGCTTGTG
GCTCGTGAAG AAACCAGCGG CAATGCCCTG GCTTTGGTCG ACGCGCAGAC GAGGGCGGGT
GAGTCAGGAA AAGCTTCGGC CTTCCTCGAG GCCTGGGTAA AAACCCACCC CGAGGACCAG
CGGGCCCAGA AAGCGCTGGC CGATATCTTG TTCCGTGTGG GACAGCTTCC TGTGGCGAAA
CAGGCTTATC AAAAACTGCT TGCAGCCAAC CCTGATGATG CTGTTTCGCT AAATAACTAC
GCCAACTTGC TCTTGCAAAT GAACGATCCT TCTGCCCAGC AAGTCGCGGA AAAGGCGATC
AATCTTTCAC CTAATCATCC GGCCTATGCC GATACCCTGG GCTGGATTCT GGTGCACAAG
GAGCAACTTG AAACTGGGCT GAGGTACTTG CGAGAAGCAC GCTTGCGTAG CCCTGAAAAT
GGCGATATTC GCTTCCATCT TGCCTATGCC TTGGCCAAGG CAGGCAGACG CGATGAGGCG
AAGGAGGAAT TGCGGGCTGC CATCGCTAGC TCCGGCGAGT TCAAAGGGAC TGCTTTATTC
GGGCAACTTC GGCGGGAGTT GGGGGTAGTC AATGAATAG
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| Protein sequence | MMHPKLLKLS GLGLIRQGLG FALRASVAVT LTAALSAIAE ATPEKAASYY EDALRKYENN
EMPAAVIQLK NAIQQDQKML AAHLLLGKAL LKNGDLKGAE AAFEEALKQG VNRGEVALPL
GQIYLALGRP EAVIEKIPAS GLPPALQVEV LTMRGNAYLE SGKSSLAVQS FENAKAIDPK
SPLPLIAEVP MLLAAGRLDQ AREKANKAVE LAPNNGSAWN IKASVLHASF DANGALAAYD
KALTLAPKHV DARIARAALL IDLKRNADAQ KDLDYLKTFA EDEPRAAYLR AVLASLHGDA
NATNAALKEV TRTVDSLPPA WLARREQLLM AAALAHYGLG SHEKAREYLD ALIARSPSNL
GAKKLLASIY ADAKDYGRAQ TLLESLQRAT PDDPQVMYLL GTVNLAQRRY AQATDLLEKA
ATRTGSPDMN RSLGLSQLGL GQAEKGLASL EKAFSANPAD FRAGMALATL YMRQAKKDKA
MKTAEAMVKQ DSANLTALNF LGTIKGASGD KAGARSAYLQ VLAKDAAFAP SVLNLVRLDI
GEKRFDEARR RLDALLKKDS NDYQVLFEYG LLEQRAERPA EAIRHLTKAG DVQRTDPGPT
LALIDLYLNQ RQGEQALKAA KALVSKFSTS LRVQQALART YLATGDAVNA RNVLTTATRL
AEFDPKAQVS IARMQLAAAN PNGAAYSVSK ALQGNPDDVA ALALAVQVEA RRGDSGKADV
ALRTLTSKHP NDVETIRAGA ELAMMRGQYQ AAVTGYRKLV AREETSGNAL ALVDAQTRAG
ESGKASAFLE AWVKTHPEDQ RAQKALADIL FRVGQLPVAK QAYQKLLAAN PDDAVSLNNY
ANLLLQMNDP SAQQVAEKAI NLSPNHPAYA DTLGWILVHK EQLETGLRYL REARLRSPEN
GDIRFHLAYA LAKAGRRDEA KEELRAAIAS SGEFKGTALF GQLRRELGVV NE
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