Gene Daro_1823 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_1823 
Symbol 
ID3566077 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand- 
Start bp1960388 
End bp1961476 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content62% 
IMG OID637680294 
ProducttRNA (uracil-5-)-methyltransferase 
Protein accessionYP_285039 
Protein GI71907452 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR02143] tRNA (uracil-5-)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones66 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.12464 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCTCC CGACCTACGA TCCCGCCGAC TACCCGACCC AGCTTGCGAC CAAGGTCGCC 
CATTTCGAGC AAAACTTCGC TCCCTTCGGC GTTGCAAATA CGGCCATACA TGCCTCCGCG 
CCGCTGCATT ACCGGATGCG CGCCGAGTTC CGCATCTGGC ACGAGGGCGA TGATCTCAAC 
TACGCGATGT TCGATCCGGC CGATCCCAAA CAACCGATCA CCCTCGAAAC CTTCCCGCCG 
GCTGCCGAAT CGATTTGCCA CCTGATGCCG CGCCTGCGCG ACAAGCTCCG GGGCAACGAG 
AGCCTGCGCC GCCGGCTGTT CCAGGCCGAT TTCCTGGCCA CGCTGAGCGG CGAAATGCTG 
GTCACCTTGA TCTACCACCG CCAACTCGAC GAGGCTTGGG AAGCTGCGGC CCGTGAAATG 
GCGGCCGAAC TCGGCATCGG CCTGATCGGC CGCAGCCGGG GTCAGAAAAT CGTCCTCGAC 
CGCGACTGGG TGCTCGAAGG CTTCGAACTG AACGGCCGGC AGCTCCGTTA CAAGCAGGTC 
GAAGGCAGCT TCACCCAGCC CAACGGCGGG GTCAATCGCC AGATGCTGGG CTGGGCCTGC 
CAGCAAGCCG CCGGGTTTGG CGGCAACCTG GTGGAGCTTT ACTGCGGCAA CGGCAATTTC 
ACTATCGCGC TGTCGCCGCT GTTCGAGCGC GTACTGGCCA CCGAAGTCAG CAAATCGTCG 
GTCCATGCCG CCCAGTACAA CCTGGCCGCC AATCAGGTCG AAAACGTCGC GCTGGTTCGC 
ATGTCGAGCG AAGAATTCAG TAATGCCCTG GCTGGCCGCG AAGAATTCCA GCGGCTGAAG 
GATATCGATC TCGAGCCCTT CCGCCACGCC ACCTTGTTCG TCGATCCGCC ACGCAGTGGG 
CTGGATGCCG TCACACTCGA ACTCGCCCGT GGTTTCGACC GTATCCTGTA CATTTCCTGC 
AACCAGGAAA CCCTGCGGGA GAATGTCATC GCGCTGCAGG ACACCCACGA AATCAAAGCT 
TCAGCCGTGT TCGACCAGTT CCCCTACACA CACCATCTGG AATGCGGGCT GTTGCTGACC 
CGGCGATAG
 
Protein sequence
MPLPTYDPAD YPTQLATKVA HFEQNFAPFG VANTAIHASA PLHYRMRAEF RIWHEGDDLN 
YAMFDPADPK QPITLETFPP AAESICHLMP RLRDKLRGNE SLRRRLFQAD FLATLSGEML 
VTLIYHRQLD EAWEAAAREM AAELGIGLIG RSRGQKIVLD RDWVLEGFEL NGRQLRYKQV 
EGSFTQPNGG VNRQMLGWAC QQAAGFGGNL VELYCGNGNF TIALSPLFER VLATEVSKSS 
VHAAQYNLAA NQVENVALVR MSSEEFSNAL AGREEFQRLK DIDLEPFRHA TLFVDPPRSG 
LDAVTLELAR GFDRILYISC NQETLRENVI ALQDTHEIKA SAVFDQFPYT HHLECGLLLT 
RR