| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1604 |
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| Symbol | |
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| ID | 3568612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 1721425 |
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| End bp | 1722381 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637680072 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_284823 |
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| Protein GI | 71907236 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 65 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGATC CTATTGAAGA TTCCGGCGAT TATAGCCGAA CTGAACCGCT CCGCCTGACC
GTTCCTGATG CCTCTTATGG CCGCCGTCTC GACCAGGTGC TGGCTGAACT GCTGCCGCAA
CATTCGCGTA ACCGTCTGCA GGGTTGGGTC CGCGAAGCCT GTGTGCAGGT TGATGGCAAA
CCGGAAACCG AACCCAAGCG CAAGATGATG GGTGGAGAGA AGCTGCTGGT CAGCGAGCCG
GAAGACGTCC GCAACCAGCC AGAGCTGCCT GAAGATATTC CACTCGATGT CGTTTTTGAG
GACGAGACGC TGCTCGTCAT CAACAAACCG GCCGGACTGG TGGTCCACCC GGGTAGCGGC
AATTGGAGTG GCACCTTGAT GAATGCGCTG CTTCACCATG TGCCGGGTAT CGAGGTCGTG
CCGCGAGCAG GCATCGTGCA CCGGCTGGAC AAGGACACCA GTGGCCTGCT GGTGGTCGCC
AAGACTCTGG AGGCGCAGAC GGACCTCGTC CGGCAGTTGC AGGCGCGGAC GGTGCGGCGG
ATTTATCTGG CCTTGGCTGC GGGTGCGATG AAGCACGAAG GTACGGTCAA TGAGCCGATC
GGACGGCATC CGTCGCAGCG CATCAAGATG GCCATCGTGC CGGAAAACCG GGGTGGCAAG
CCGGCGATTA CCAATATCCG CATTCTGGAG GCCTTTACCT ACACGACCTT TGTCGAGTGC
TCGCTGGAAA CCGGTCGTAC GCACCAGATC CGCGTGCACA TGGCGGCGAT CCATCACCCG
CTGGTTGGTG ATCAGGTCTA TGGCAAGCAC AACCCGAAGT TGCCGGAATT TCCACGGCAG
GCGCTGCACG CTACCCGCCT TGGCCTGGTT CACCCGCTTA CCGGTCTGAA AATGCAGTGG
GAAGTGCCGA TGCCGGAGGA TATGCGTAAC CTGCTCGATA ACCTGCGCTA TGGCTGA
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| Protein sequence | MNDPIEDSGD YSRTEPLRLT VPDASYGRRL DQVLAELLPQ HSRNRLQGWV REACVQVDGK
PETEPKRKMM GGEKLLVSEP EDVRNQPELP EDIPLDVVFE DETLLVINKP AGLVVHPGSG
NWSGTLMNAL LHHVPGIEVV PRAGIVHRLD KDTSGLLVVA KTLEAQTDLV RQLQARTVRR
IYLALAAGAM KHEGTVNEPI GRHPSQRIKM AIVPENRGGK PAITNIRILE AFTYTTFVEC
SLETGRTHQI RVHMAAIHHP LVGDQVYGKH NPKLPEFPRQ ALHATRLGLV HPLTGLKMQW
EVPMPEDMRN LLDNLRYG
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