| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1579 |
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| Symbol | |
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| ID | 3568723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 1694339 |
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| End bp | 1697620 |
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| Gene Length | 3282 bp |
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| Protein Length | 1093 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637680047 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_284798 |
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| Protein GI | 71907211 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.260436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAACG CGCCTGTGGG CATTCTTTAC ACAAAAAACG GCGAAATACT TCGCTATAAC
GCCAAGTTTT CCGAAATCTT TGGTTTTGAT ACCGAAATCA TTGGCAAATC GGCAAGACAG
CTCTGCCCGT CGGATGCCGC GTATGAAGCG CTGGGGGAAG TAGCCGGCCC GATCCTCTCC
GCAGGCAAGC CTTTTCATCA GGAAATCCAG CTCAGGCACC ACGACGGGCA TACTTTCTGG
GCTGACGCCG TTGCCTATCT CTTTGATCCA CGACACCCCG CAGAGGGAAC CATCTGGATC
ATCAACGATA TATCGGAGCG CAAGCAGGCT GAACGGAATC TTCATGAAAC CGTGCAGGAA
CTGCAAAGCA TTTTCAACAA TGCATCCGTT GGCATTGTAT TCACCAACCG TCGCACCGTC
CTGCGCTGCA ACCGTCGCTT CGAGGAAATA GTCGGCTACG CCTCGGACGA ATTACACGGG
ATGCCCACTG CCAATCTTTA CGCCAGTGCA GAGAGCCATG AAGAACTGGG TCGCCAGTCC
TCTCCATTGT TGTCAGCCGG AAAAGCATTC AGTGCCACAA AGCAGTTCAG GAGAAAAGAT
GGCCATCTGA TCTGGTGCCA GGTATTCGCA AAAGCAATCG ACCCCAACGA CCCCAGTCGT
GGCATTGTCT GGATTGCTGC CGATGTCACC GAGGCCGTCA GCACTCGGGA AGCACTGGAA
AAATCATCGC GTGAAATGGA AGCGCTGATG GCCAATTCAT CGGTGGGCAT CGTTGTCACC
CATGATCGAA AAATCGTCCG CTACAACCAA CGTTTCGGCA AGCTGTTCGG GTTCCCCGGA
GAGAATGGGA TCGGCATGGA TACGGCCGGA CTCTACCGAT CGGCCGAAGA ACACACCGAA
CTCAATCGGC GTGCCGCCCC CGCTCTTTTC CAGGCCAAGC CATTCCAGAC CGAGCTCTAC
ATGCGCCGCC AGGATGGCAG CGACATCTGG GTCAACCTGA TCGGCTACGT GGCCGATCCA
ACGGATCCAT CAATGGGCGT ATTCTGGATT GCCGAAGACC GAACTGCCTT CAAACAGGCC
GAAGAGGAAC TCAAAAAAGC CTATTTCGAC CAGCGCCTGA TTTTCGACAA TTGCGTCGCG
GGCATCGCCT TCGTACGAAA TCGGGTATTC CAGCAATGCA ACCGCCGGTT CGAAGAATTG
TATGGCTACG GACCGGGCGA GTTAACCGGC AAACCGACAA GGGTCACCTA CTTCTCCGAT
AAAGCGCACG CCGAGATAGG TACGACCGCC TACGAGATGC TGGGCAGAGG CGAAACCTTC
GTTTCGGAAG TCGTTCACCG GCGACAAAAC GGAGATCCGA TCTGGATGCG GATTACCGGC
CGGGCCATCG ATCCGGCAAA TCCGAACGAT GGTTCCATCT GGAACTACGA AGACATCACC
TCTCGCAAAG TGGCCGAGGA CTCCCTGCGT GAGTCAGTCA TGCTGCAGCG GGCGATTCTC
AACAGCGCAA AACTGATGAT CTTGTCGACC GACAGCGAAG GTCGGGTCAT CTCATGCAAC
CCGGCGACGG AGCAGATGCT TGCTTATCCT TCCGCCGAAT TGCTCGGACG AACGCCCGTT
GAGTGCTTCT TCCTTCGTGA AGAAATTCAG GAACGTCGCC GGGCGCTATC CTCAGAAACG
GGCTTCGATC CGGCCAGCGA TATTGATGTA CTGCTGGCCA GGGTCCGGCT GGGCTCGGTG
GACCAGGGGC AATGGACCTT CCAGCGCAAA GACGGCGAGA AATTCATCGT TGAACTCTCC
ATCTCGGCAC TGCACCCCGA AGATAAAAAA GCCCAAGGCT TTCTCTTTGT TGCCAGCGAC
ATTACCGAGC GAAAACGGGC CGAAGATGCG CTGCTGCGCT CCAGGGACGA ACTCGAGCTG
CGCGTCAAGG AACGCACCAG CGAACTCGAA AGCGAGGTGC TTGAGCGCCG TCGTATCGAA
AGCAAGTTAC GCTACCTTGC CCACCATGAC GCACTGACCG GCCTGGCCAA TCGAACGCTG
CTCCAGCAAC GGCTCGGCGA GGCGATGGAC AACGCAGCCC AGGACGATAC CAAGGTCGCG
ATCCTGTTCA TTGACCTGGA TCGTTTCAAG ACCATCAATG ACTCCCTGGG CCACCACATT
GGCGACACAC TGCTCAAAAA TGTTGCCAGT CGACTGACTG AAACGCTCCG CTCCAACGAC
ACGATCGCCC GGCTCGGCGG TGACGAGTTC ATGATCATTC TGCCGCTCAA GGCAAACGAG
GCACTGGCGG GCAAGCTTGC CTCGAAAATC CTCGATGCCT TGCGCCCTCC GATACGCATC
GATGGGCACG AGTTGTTCGT CACGCCATCC ATCGGCATCT GTTTTTATCC GAATGACGGG
GTTACCGTAA ATGCCCTGAT GCGTAACGCC GATACTGCGA TGTATCAGGC CAAGGCCAAT
GGACGGAACA CGTATTGTTA TTTCACGGCA GAGATGAATG CCGCGGCCGA CAACTACTTC
CAGATCGAGT CAGACCTTCG TCGCGCCGTG GACCGGAATG AGTTCGAAGT GTTTTACCAG
CCAGTCATTG ACCTGAAGAC TCACCGCATC ACCTCCTACG AAGCCCTGGT CCGCTGGCGC
CATCCCACCA AGGGCCTGGT TGGCCCGGCC CAGTTCATCA CGGTTGCCGA GGAAAGCGGT
CTGATCGGCG AAATTGGAAC CATCGTTTTG CGTCAAGCCT GTTCTCAACT ACGAAGCTGG
ATCGACGAAG GATTTACTTC ACCGATTCTG GCGCTCAATC TATCCCCTAT CCAGTTCAAC
GACCCCAATC TCACCGAGGG CATTTGCCGC ATCCTTCGCG ACTACGATCT GACGCCCGAT
CGGATCGAAC TGGAAATCAC GGAAACCGTC ATCATGCAGG ATGGCGAGTT GGCGCTGGGC
ACCTTGCAAA ATCTGAGTAG CCGCGGTTTC CGCCTCTCGA TCGACGACTT CGGTACCGGT
TACTCAAGTC TGGCCTATCT GAAGCGCTTC CCTGTCGACA CGCTGAAGAT CGACCGCTCC
TTCATCACGG ACATGACTGC GAATGAAAAT GACAGGGCTA TTGTCACCGC CATCATGGCG
TTGGCCAACA GCCTTCATCT TTCCGTAATT GCTGAAGGCG TTGAGACGAA GGAGCAATAC
GATTTGCTGT CAGCCCTGAA CTGTAACTTT GCCCAAGGCT ATTACATGGC CAAGCCAATG
CCTGCCGAGA TGATCAGCCT CGAAACAGCT GCGACCACCT GA
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| Protein sequence | MNNAPVGILY TKNGEILRYN AKFSEIFGFD TEIIGKSARQ LCPSDAAYEA LGEVAGPILS
AGKPFHQEIQ LRHHDGHTFW ADAVAYLFDP RHPAEGTIWI INDISERKQA ERNLHETVQE
LQSIFNNASV GIVFTNRRTV LRCNRRFEEI VGYASDELHG MPTANLYASA ESHEELGRQS
SPLLSAGKAF SATKQFRRKD GHLIWCQVFA KAIDPNDPSR GIVWIAADVT EAVSTREALE
KSSREMEALM ANSSVGIVVT HDRKIVRYNQ RFGKLFGFPG ENGIGMDTAG LYRSAEEHTE
LNRRAAPALF QAKPFQTELY MRRQDGSDIW VNLIGYVADP TDPSMGVFWI AEDRTAFKQA
EEELKKAYFD QRLIFDNCVA GIAFVRNRVF QQCNRRFEEL YGYGPGELTG KPTRVTYFSD
KAHAEIGTTA YEMLGRGETF VSEVVHRRQN GDPIWMRITG RAIDPANPND GSIWNYEDIT
SRKVAEDSLR ESVMLQRAIL NSAKLMILST DSEGRVISCN PATEQMLAYP SAELLGRTPV
ECFFLREEIQ ERRRALSSET GFDPASDIDV LLARVRLGSV DQGQWTFQRK DGEKFIVELS
ISALHPEDKK AQGFLFVASD ITERKRAEDA LLRSRDELEL RVKERTSELE SEVLERRRIE
SKLRYLAHHD ALTGLANRTL LQQRLGEAMD NAAQDDTKVA ILFIDLDRFK TINDSLGHHI
GDTLLKNVAS RLTETLRSND TIARLGGDEF MIILPLKANE ALAGKLASKI LDALRPPIRI
DGHELFVTPS IGICFYPNDG VTVNALMRNA DTAMYQAKAN GRNTYCYFTA EMNAAADNYF
QIESDLRRAV DRNEFEVFYQ PVIDLKTHRI TSYEALVRWR HPTKGLVGPA QFITVAEESG
LIGEIGTIVL RQACSQLRSW IDEGFTSPIL ALNLSPIQFN DPNLTEGICR ILRDYDLTPD
RIELEITETV IMQDGELALG TLQNLSSRGF RLSIDDFGTG YSSLAYLKRF PVDTLKIDRS
FITDMTANEN DRAIVTAIMA LANSLHLSVI AEGVETKEQY DLLSALNCNF AQGYYMAKPM
PAEMISLETA ATT
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