| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1404 |
|---|
| Symbol | |
|---|
| ID | 3569089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 1534107 |
|---|
| End bp | 1536074 |
|---|
| Gene Length | 1968 bp |
|---|
| Protein Length | 655 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637679872 |
|---|
| Product | cytochrome c family protein |
|---|
| Protein accession | YP_284623 |
|---|
| Protein GI | 71907036 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2864] Cytochrome b subunit of formate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 0.352447 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0404574 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTCC AGAAATTCTT CGGGGTATTG GCACTAGCCA GTGCTTCATT TCTTGCCAGT
CATGGCGCAA CGGCGGCAGA TGCGGTACCC AAGCTCGACA ATGCATCGTG TCTGACCTGT
CACGAAACCG GCAAGCACAA GATCGAAGTT GCTGCCGGTG ATGAAAAGCG TGCCTTGGCC
CCCGTCAATC CAGGCAAGTT GGCCAAGAGT GTCCATAGCA CAATGGAATG TGTGGCTTGC
CACACGGACA TCGTCGATGC CAAGGAAAAG CATGAAAAGG CGGCCAACGT GGCGCAGCCG
GATTGTGCAA CCTGCCATAC GAAGCTGTGG GATCAGGCAA AAGCCAATCC GGCCGGCAAG
GAGCGTTTGG GCGTCGTCGC TCAGAACGTC GATGCTTACA AGGCTTCGTT CCATGCCCGT
CCAGATGCGG ACAATCCGGA TCGTCCGAAA GCGACCTGCG GTGATTGCCA TGCAACACAC
GATTTTGCCG TACCCAAGAA AGGTACGCCG GAGCGCGATG CCTGGCGTCT GACGATCCCC
AAGACCTGCG GTGAAAAGTG CCACGACGAG CAGCTTGAGG ACTACGAAGG CTCTGTCCAT
GGCAAATTGA CCATGGGCAA GGATGATCCC AAGGGGGCCG TGTGTATCGA CTGCCATACC
AGCCATGACA TCAAGGGAGC ATCGTCTGAC CCGTTCAAGC TGAAGAACGT CGAGGCTTGT
GGCGATTGTC ACAAGGAAGA ACTGCATAGC TATCGCGACA CTTATCACGG GCAGGTGAAC
AAACTCGGCT ATACCTACAC GGCCAAGTGT TCGAATTGCC ACGGCAGCCA CGGCATTGCC
AAAGTGGATG ATCCGGCCTC CAAGGTCCAT ATCAAGAATC GCCTGAAGAC CTGCCAGGAG
TGTCACAACG AGAAGAAGGG CATGCCACTG GCGACCGAGG GTTTCATCTC GTTTGGCCCG
CACGCCAATG GTCACGATTT CGACAAATAT CCGCAGATGT GGATAGCCAC GAAATTCATG
GTTGCCCTGC TGATCGGCGT CTTCGCCTTC TTCTGGTTGC ATTGTGGCCT GTGGTACTAC
CGCGAATGGC AAGAGCGCAA GGCGCACAAG ACCATGTCTC GCGTTTCTAC CGAGGCCTTG
GGCTTGGCCA AGCCGGAGAA GCACTTCCAG CGCTTTGCCC TGGGGTGGCG CGTCGCTCAC
CTGGTATTTG CGCTGGTGAC GATGACCCTT GTTCTGACCG GTACCTCGGC GCTGTTCTCG
AGTAGCAGCT GGGCGCCGCT GGTGGCGGCG GCGGTTGGTG GGCCCAAGAT GCTCGGCATC
ATTCACCGGG TAGCTGCGGC GTTGTTTGTC GGCATCTTCA TGATCCACTT CGTCTACGTC
ATGCAGCGCC TGTTGCGTAG CAGGACTTTC CGTTGGTTCG GGCCGGATTC ACTGATTCCG
AACTGGAAGG ACTTTGCCGA TTGCTGGGGC ATGTTCAAGT GGTTCTTCGG CCGCGGACCC
AAGCCGCAGT TCGAACGCTG GACCTACTTC GAGAAGTTCG ATTACTGGGC AGTGTTCTGG
GGTGTCAATA TCATCGGGTG GAGCGGCCTG ATGCTGGCCT TCCCGCATGT GACGGCCAAG
TTCCTGCCGG GCTGGGTCTT CAATGTGGCG ACGCTGGTGC ATGGCGAAGA GGCCTTCCTC
GCAGCGGTCT TCCTCTTCAC GGTGCATTTC TTCAACAACC ACTTCCGTCC GGATAAACTG
CCGCCGCCGG ATGTGGTGAT GTTCACCGGT ACGCAGTCGA TCGAGGAGTT CCGCAAGGAC
CATCCGGCGC ATTACCAGCG CCTGGTCGAC ACCGGAGAGC TGGAGAAGTA TCTGGTGGAT
GCGCCGTCAC AGCAGATGCA CACGGGATCG GTTATTCTTG GTCTAACGCT GATTACCGTT
GGCCTGGGAT TGCTGGCTTT GGTCGGAACA GGTTTCTTCA GTCACTGA
|
|---|
| Protein sequence | MNFQKFFGVL ALASASFLAS HGATAADAVP KLDNASCLTC HETGKHKIEV AAGDEKRALA
PVNPGKLAKS VHSTMECVAC HTDIVDAKEK HEKAANVAQP DCATCHTKLW DQAKANPAGK
ERLGVVAQNV DAYKASFHAR PDADNPDRPK ATCGDCHATH DFAVPKKGTP ERDAWRLTIP
KTCGEKCHDE QLEDYEGSVH GKLTMGKDDP KGAVCIDCHT SHDIKGASSD PFKLKNVEAC
GDCHKEELHS YRDTYHGQVN KLGYTYTAKC SNCHGSHGIA KVDDPASKVH IKNRLKTCQE
CHNEKKGMPL ATEGFISFGP HANGHDFDKY PQMWIATKFM VALLIGVFAF FWLHCGLWYY
REWQERKAHK TMSRVSTEAL GLAKPEKHFQ RFALGWRVAH LVFALVTMTL VLTGTSALFS
SSSWAPLVAA AVGGPKMLGI IHRVAAALFV GIFMIHFVYV MQRLLRSRTF RWFGPDSLIP
NWKDFADCWG MFKWFFGRGP KPQFERWTYF EKFDYWAVFW GVNIIGWSGL MLAFPHVTAK
FLPGWVFNVA TLVHGEEAFL AAVFLFTVHF FNNHFRPDKL PPPDVVMFTG TQSIEEFRKD
HPAHYQRLVD TGELEKYLVD APSQQMHTGS VILGLTLITV GLGLLALVGT GFFSH
|
|---|
| |