Gene Daro_1362 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_1362 
Symbol 
ID3569143 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp1482150 
End bp1484738 
Gene Length2589 bp 
Protein Length862 aa 
Translation table11 
GC content59% 
IMG OID637679830 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_284581 
Protein GI71906994 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.525156 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.67572e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTATCAGC GGTATCGACG ACTGGTTATC AGACTAGAAC AGGCTCTTCG TACCAGCGAA 
GCGCGTCTGC ATTCCTTTTT TGATGCCACG CCGGACGCCT TGCTGATCAG CGATGCCCAC
GGCACCATTA CCATGGCCAA CCAGCAGGTC GAGAAATTGC TTGGCTATGT GGCGGCGGAA
CTGGTCGGCA AGTCGATCGA AGATCTGGTG CCGAACCGTT TCAAGGCCAG CCATCCGGTA
TTACGCAGTG AGTTCACCGC TTCACCCCGG GCTCGCCGGA TGGGCAACGG CATGGCCGTC
AAGGCGCGGC GAAAGGACGG CAGCGAATGT GATGTTGATG TCAGCCTGAG CCGGATTGAG
ACGGACGAGG GCATGTTTTT CGCCAGCGCC TTGCGTGACA TCAGTGAGCG CAAGAGGAAA
GAAGAAGAGC TGCGGCGGCA GAACGGCGTG CTCTCCACCA TCTTCCAGAG CTTCCCCGGC
GGCATTACGC TGTTTGACGC GGACTTGCGC CTGGTGGCGT TCAACGACCA GTTCAAGGCC
TTGCTGGACC TGCCGGATGT GCTATTCGAG CAGCCTGAGC CGGATTTTGA GACGTTGATA
CGTTACAACG CCGCGCGTGG CGAATATGGC CCCGGCGACC CCGAACAACA GGTCGCCGCG
ATCATCGCGA GAACCAAAAA ATTTGTTCCC CACAAAATCG AGCGGGTACG CCCCGACGGA
ACCTCACTGT CGATTCGCGG TGTGCCGCTC GCTAGCGGCG GTTTTCTCTC CATCTATACC
GACATCACTG ACCGAAAACA ATCCGAAGAA CAACTGCGCA TTGCCGCAGC CGCTTTCGAA
TCCCAAACCT GCATGATCAT CACCGATGCG AACCGGGTGA TCCAGCGCGT TAACCGGGCC
TTCATCGAGA CCACGGGTTA CTCGGCGGAG GAGGCTGTCG GCCAGACCCC GCGCCTGCTC
CAGTCGGGTC GTCACGGTGC AGATTTCTAT CGTGAAATGT GGGAAACCAT CCACCGCACG
GGGGCATGGC AAGGTGAAAT CTGGGGGCGG CGCAAGAACG GTGAAGTGTA TCCCAAATGG
TTGTCCATCT CGGCGGTCGT TGGTACCAAT GGCAGGGTCA GCCATTACAT CGGCACCCAT
AACGACATCA CAGAGCGCAA GAAGGCCGAA GAACGAATCA ACGCCCTGGC CTTCTTCGAT
CAACTGACCG GCCTGCCCAA CCGGACGCTG TTACTGGATC GTTTGAAGCA AACGATACTA
AGCAGTGGCC GTAGTGATAG TCACGGTGCC TTGTTGTTCA TCGACCTCGA CAACTTCAAA
ACGCTCAATG ACACGCTCGG CCACGATGTG GGCGACCAGC TGCTCAAGCA AGTGGCTCTG
CGCCTGACGC ACTGTGTGCG CGATGGCGAC ACGGTCGCCC GACTGGGCGG TGATGAATTC
GTGGTGGTCC TCGCCAACTT GAACACCAAC GACAAAGAGG CGGCCCAGGA TACCGAAACC
GTGGCCGAGA AGATTCTCGC CACGCTCAAC CAGACCTACC AACTCGGCCA TGTGACCCAC
CACAGCAGCG CCAGCATCGG TGCCACCTTG TTCAAGGGGC CGCTGATTCC GATCGATGAC
CTGATGAAAC AGGCCGACCT CAGCATGTAC AAGGCCAAGG CTGCAGGCCG CAATGCGGTT
CGTTTCTTCG ACCCTTCGAT GGAAATCGCG GTCAAGGTAC GGGCCGAGAT GGAGGATGAC
CTGCTGCGCG CCCTGGCAGA GAAACAGTTC CTGCTCCACT ACCAGGCCCA GATGGTCGGC
GAGCGCCTGA CCGGTGCTGA AGTGCTGCTG CGCTGGCAGC ACCCCCAGCG CGGCATGGTT
TCGCCGGCCG AGTTCATTCC GCTGGCCGAG GAAACCGGCT TGATTCTGCC CCTGGGCCAC
TGGGTGCTGG AAACGGCTTG TACCCAGTTG GCGCAATGGG CGGGGCGACC GGAAGTGGCC
CATCTGACCC TGGCGGTGAA TGTCAGTGCC CATCAGTTTC GCCAGAACGA CTTCGTGGAT
CAGGTGCTTG GGGTTCTCGA AAAGACCGGT GCCAATCCCC AGCGCCTCAA GCTGGAGCTG
ACGGAAAGCC TGCTCGTCGA GAACGTCGAA GACATTATTG ACAAGATGGC TGCACTCAAG
CACCGCGGTG TGGGCTTTTC TCTCGACGAC TTCGGCACTG GCTATTCCTC GCTGTCTTAT
CTGAAGCGCC TGCCACTGGA CCACTTGAAG ATTGACCAGT CCTTTGTTCG CGACGTACTC
ACCGATAGCA ACGATGCCTC GATTGCCCGA ACCATCGTCG CGCTGGCCAA CAGCCTGGGG
CTGGGGGTGA TCGCCGAAGG CGTTGAAACC GAAGCGCAGC GCGACTTTCT GGCCAGTTCC
GGTTGCCATA CCTATCAAGG CTATTACTTC AGCCGGCCGC TACCGATCGA GGATTTCGAA
TCCTTCACGT TAACGGCCAT TTGTAGCAGC TGTCCCGAGC GGACGGATCC CAAAACCTGC
GGATGCAAGG CATTCGTTTC ACTCATGTCC CAACTGAAGT CTGAGAGCAT CATCACTAAT
GAAAACTAA
 
Protein sequence
MYQRYRRLVI RLEQALRTSE ARLHSFFDAT PDALLISDAH GTITMANQQV EKLLGYVAAE 
LVGKSIEDLV PNRFKASHPV LRSEFTASPR ARRMGNGMAV KARRKDGSEC DVDVSLSRIE
TDEGMFFASA LRDISERKRK EEELRRQNGV LSTIFQSFPG GITLFDADLR LVAFNDQFKA
LLDLPDVLFE QPEPDFETLI RYNAARGEYG PGDPEQQVAA IIARTKKFVP HKIERVRPDG
TSLSIRGVPL ASGGFLSIYT DITDRKQSEE QLRIAAAAFE SQTCMIITDA NRVIQRVNRA
FIETTGYSAE EAVGQTPRLL QSGRHGADFY REMWETIHRT GAWQGEIWGR RKNGEVYPKW
LSISAVVGTN GRVSHYIGTH NDITERKKAE ERINALAFFD QLTGLPNRTL LLDRLKQTIL
SSGRSDSHGA LLFIDLDNFK TLNDTLGHDV GDQLLKQVAL RLTHCVRDGD TVARLGGDEF
VVVLANLNTN DKEAAQDTET VAEKILATLN QTYQLGHVTH HSSASIGATL FKGPLIPIDD
LMKQADLSMY KAKAAGRNAV RFFDPSMEIA VKVRAEMEDD LLRALAEKQF LLHYQAQMVG
ERLTGAEVLL RWQHPQRGMV SPAEFIPLAE ETGLILPLGH WVLETACTQL AQWAGRPEVA
HLTLAVNVSA HQFRQNDFVD QVLGVLEKTG ANPQRLKLEL TESLLVENVE DIIDKMAALK
HRGVGFSLDD FGTGYSSLSY LKRLPLDHLK IDQSFVRDVL TDSNDASIAR TIVALANSLG
LGVIAEGVET EAQRDFLASS GCHTYQGYYF SRPLPIEDFE SFTLTAICSS CPERTDPKTC
GCKAFVSLMS QLKSESIITN EN