Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_1278 |
Symbol | |
ID | 3569346 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 1387068 |
End bp | 1388921 |
Gene Length | 1854 bp |
Protein Length | 617 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637679741 |
Product | NAD-dependent epimerase/dehydratase |
Protein accession | YP_284500 |
Protein GI | 71906913 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.00235509 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAGA CAATAAAACC GACACTCTTC AGCCTGAACC CGCGGACGCT GGCCGCCTTT GCCTTTGACG TCTGTGCCGC CGGGGCCGCC TGGTTGTTGG CGTTCTGGCT GCGTTTCAAC TTTGACACGC CAGCTGAGTT CCAGGGAGTT GCCGTCGGGT CGCTGCTCTG GGTCTTGCCG TTGTTCGCGG CCCTGTTTTA TTTTTTCGGG CTGTACCAAG GGCTTTGGCG TTTTGCCAGT ATCACCGACC TGCAGCATTT GCTCAGTGCA GTCTTCGTCG GTGCCTTGCT GACCTCGACA GTGGTCGCGA TTTTCAAGGT GCCGCTGATT CCACGCTCGG TGCTCGTCCT GCATCCGCTG CTTCTGTCCA TCATCATGGG CGGAACGCGG TTTGCCTATC GAAGCTGGAA GGAGCACCGC GTCTATGGTC CGGCCAAGCT GCGCGGACAG CCGGTCCTGA TCATCGGTGC GGGCGAGGCG GCCGATTCCC TGCTGCGGGA AATTCATCGT AGCGGTCAGT GGTACGCGGT CGCGATTGTC GATGACAATC CAGGCAGAAC GGGGCGGCGT CTGAGAGGTT TGCCCATCAT GTCGCCGATC GAAAACATTG GTCCGATCGC GGAAAACCTT GGTGCAAAGC ATGCCATCAT CGCCATGCCG AATGATAGGC CCGCCCAGCG GCGACGCGTC ACGGAACTGG CTTCGGCGGC TGGGTTGACC GTCCTGACCG TGCCTTCGTA TGACGATCTG CTGTCAGGGC GGCTTTCGGT GTCCAGCATT CGGAAGGTCG AACTGGAGGA CTTGCTGGGC CGCGAAGCCG TGTCGCTGGA CGATAACGGC GTGCACGATT TGCTGGGCGG AAATGTTGTA CTGGTCACTG GCGCCGGCGG TTCCATCGGG TCCGAACTCT GTCGTCAGAT TGCCCGTTTC AAGCCTTCGC GACTGGTGTT GGTTGACGCT TCCGAATTCG CGCTCTACAG CATTGGCGAA GAGTTGAGTG TCAGCCATCC GTTGTTGCAG TGCCAGTCAT GGGCTGCTGA TGTTCGTGAC AAGGATCGCG TCACGGAGAT ATTTGCTCAA GAGCGGCCGG TTGTCGTGTT CCATGCTGCT GCTTACAAGC ATGTGCCTTT GATGGAAAGC GTCAATGCCT GGCAGGCGGT CCGGACCAAT GCCTTGGGAA CTCACACGGT AGCGAGGATT GCGCAGGATT TTGAGGTCAG GAAATTTGTC CTGATTTCGA CTGACAAGGC AGTGAATCCG ACAAACGTGA TGGGGGCGAC CAAGCGGCTT GCCGAGCTGC TTTGTCTGGC TGTCAATGCC GGCCAAAGTA CAAAATTCGT GACAGTCAGG TTTGGGAACG TCCTAGGCAG CAACGGAAGT GTCATACCGA AGTTCCGGGA GCAGATAGCT CAAGGTGGAC CAATCACCGT AACTCATCCG GACATTGTTC GCTATTTCAT GACGATACCC GAGGCTGCGC AGTTGGTTTT GCAGGCTGGT TTGATGGGGA AGGGGGGCGA AATCTTCGTT CTCGACATGG GGGAGCCAGT CAGGATCATT GATCTCGCCA AGGACATGAT CCGACTATCA GGCCTTTCCG ATGATGATGT TCGGATTGAA TTCACCGGTT TGCGGCCCGG TGAAAAGCTG TATGAAGAAC TACTTGCTGA TGATGAAACG ACGCTTACGA CGCCGCATCC AAAGTTGCGA ATTGCTCGTT TTTCGGATGA TTTGTCTGCC GCGGAGTGCG AGGAATTGCT GAACTGGTTG CAGCTTCCTG TTCGTCCGAC CTCTGACGTA AAAGCCGGAT TGCGGCGATT TGTTCCTGAG TACGTTGCCG ATTTGGCTGC CTAG
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Protein sequence | MNKTIKPTLF SLNPRTLAAF AFDVCAAGAA WLLAFWLRFN FDTPAEFQGV AVGSLLWVLP LFAALFYFFG LYQGLWRFAS ITDLQHLLSA VFVGALLTST VVAIFKVPLI PRSVLVLHPL LLSIIMGGTR FAYRSWKEHR VYGPAKLRGQ PVLIIGAGEA ADSLLREIHR SGQWYAVAIV DDNPGRTGRR LRGLPIMSPI ENIGPIAENL GAKHAIIAMP NDRPAQRRRV TELASAAGLT VLTVPSYDDL LSGRLSVSSI RKVELEDLLG REAVSLDDNG VHDLLGGNVV LVTGAGGSIG SELCRQIARF KPSRLVLVDA SEFALYSIGE ELSVSHPLLQ CQSWAADVRD KDRVTEIFAQ ERPVVVFHAA AYKHVPLMES VNAWQAVRTN ALGTHTVARI AQDFEVRKFV LISTDKAVNP TNVMGATKRL AELLCLAVNA GQSTKFVTVR FGNVLGSNGS VIPKFREQIA QGGPITVTHP DIVRYFMTIP EAAQLVLQAG LMGKGGEIFV LDMGEPVRII DLAKDMIRLS GLSDDDVRIE FTGLRPGEKL YEELLADDET TLTTPHPKLR IARFSDDLSA AECEELLNWL QLPVRPTSDV KAGLRRFVPE YVADLAA
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