Gene Daro_1278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_1278 
Symbol 
ID3569346 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp1387068 
End bp1388921 
Gene Length1854 bp 
Protein Length617 aa 
Translation table11 
GC content57% 
IMG OID637679741 
ProductNAD-dependent epimerase/dehydratase 
Protein accessionYP_284500 
Protein GI71906913 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1086] Predicted nucleoside-diphosphate sugar epimerases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.00235509 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAGA CAATAAAACC GACACTCTTC AGCCTGAACC CGCGGACGCT GGCCGCCTTT 
GCCTTTGACG TCTGTGCCGC CGGGGCCGCC TGGTTGTTGG CGTTCTGGCT GCGTTTCAAC
TTTGACACGC CAGCTGAGTT CCAGGGAGTT GCCGTCGGGT CGCTGCTCTG GGTCTTGCCG
TTGTTCGCGG CCCTGTTTTA TTTTTTCGGG CTGTACCAAG GGCTTTGGCG TTTTGCCAGT
ATCACCGACC TGCAGCATTT GCTCAGTGCA GTCTTCGTCG GTGCCTTGCT GACCTCGACA
GTGGTCGCGA TTTTCAAGGT GCCGCTGATT CCACGCTCGG TGCTCGTCCT GCATCCGCTG
CTTCTGTCCA TCATCATGGG CGGAACGCGG TTTGCCTATC GAAGCTGGAA GGAGCACCGC
GTCTATGGTC CGGCCAAGCT GCGCGGACAG CCGGTCCTGA TCATCGGTGC GGGCGAGGCG
GCCGATTCCC TGCTGCGGGA AATTCATCGT AGCGGTCAGT GGTACGCGGT CGCGATTGTC
GATGACAATC CAGGCAGAAC GGGGCGGCGT CTGAGAGGTT TGCCCATCAT GTCGCCGATC
GAAAACATTG GTCCGATCGC GGAAAACCTT GGTGCAAAGC ATGCCATCAT CGCCATGCCG
AATGATAGGC CCGCCCAGCG GCGACGCGTC ACGGAACTGG CTTCGGCGGC TGGGTTGACC
GTCCTGACCG TGCCTTCGTA TGACGATCTG CTGTCAGGGC GGCTTTCGGT GTCCAGCATT
CGGAAGGTCG AACTGGAGGA CTTGCTGGGC CGCGAAGCCG TGTCGCTGGA CGATAACGGC
GTGCACGATT TGCTGGGCGG AAATGTTGTA CTGGTCACTG GCGCCGGCGG TTCCATCGGG
TCCGAACTCT GTCGTCAGAT TGCCCGTTTC AAGCCTTCGC GACTGGTGTT GGTTGACGCT
TCCGAATTCG CGCTCTACAG CATTGGCGAA GAGTTGAGTG TCAGCCATCC GTTGTTGCAG
TGCCAGTCAT GGGCTGCTGA TGTTCGTGAC AAGGATCGCG TCACGGAGAT ATTTGCTCAA
GAGCGGCCGG TTGTCGTGTT CCATGCTGCT GCTTACAAGC ATGTGCCTTT GATGGAAAGC
GTCAATGCCT GGCAGGCGGT CCGGACCAAT GCCTTGGGAA CTCACACGGT AGCGAGGATT
GCGCAGGATT TTGAGGTCAG GAAATTTGTC CTGATTTCGA CTGACAAGGC AGTGAATCCG
ACAAACGTGA TGGGGGCGAC CAAGCGGCTT GCCGAGCTGC TTTGTCTGGC TGTCAATGCC
GGCCAAAGTA CAAAATTCGT GACAGTCAGG TTTGGGAACG TCCTAGGCAG CAACGGAAGT
GTCATACCGA AGTTCCGGGA GCAGATAGCT CAAGGTGGAC CAATCACCGT AACTCATCCG
GACATTGTTC GCTATTTCAT GACGATACCC GAGGCTGCGC AGTTGGTTTT GCAGGCTGGT
TTGATGGGGA AGGGGGGCGA AATCTTCGTT CTCGACATGG GGGAGCCAGT CAGGATCATT
GATCTCGCCA AGGACATGAT CCGACTATCA GGCCTTTCCG ATGATGATGT TCGGATTGAA
TTCACCGGTT TGCGGCCCGG TGAAAAGCTG TATGAAGAAC TACTTGCTGA TGATGAAACG
ACGCTTACGA CGCCGCATCC AAAGTTGCGA ATTGCTCGTT TTTCGGATGA TTTGTCTGCC
GCGGAGTGCG AGGAATTGCT GAACTGGTTG CAGCTTCCTG TTCGTCCGAC CTCTGACGTA
AAAGCCGGAT TGCGGCGATT TGTTCCTGAG TACGTTGCCG ATTTGGCTGC CTAG
 
Protein sequence
MNKTIKPTLF SLNPRTLAAF AFDVCAAGAA WLLAFWLRFN FDTPAEFQGV AVGSLLWVLP 
LFAALFYFFG LYQGLWRFAS ITDLQHLLSA VFVGALLTST VVAIFKVPLI PRSVLVLHPL
LLSIIMGGTR FAYRSWKEHR VYGPAKLRGQ PVLIIGAGEA ADSLLREIHR SGQWYAVAIV
DDNPGRTGRR LRGLPIMSPI ENIGPIAENL GAKHAIIAMP NDRPAQRRRV TELASAAGLT
VLTVPSYDDL LSGRLSVSSI RKVELEDLLG REAVSLDDNG VHDLLGGNVV LVTGAGGSIG
SELCRQIARF KPSRLVLVDA SEFALYSIGE ELSVSHPLLQ CQSWAADVRD KDRVTEIFAQ
ERPVVVFHAA AYKHVPLMES VNAWQAVRTN ALGTHTVARI AQDFEVRKFV LISTDKAVNP
TNVMGATKRL AELLCLAVNA GQSTKFVTVR FGNVLGSNGS VIPKFREQIA QGGPITVTHP
DIVRYFMTIP EAAQLVLQAG LMGKGGEIFV LDMGEPVRII DLAKDMIRLS GLSDDDVRIE
FTGLRPGEKL YEELLADDET TLTTPHPKLR IARFSDDLSA AECEELLNWL QLPVRPTSDV
KAGLRRFVPE YVADLAA