| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1239 |
|---|
| Symbol | |
|---|
| ID | 3569423 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 1345582 |
|---|
| End bp | 1346115 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637679706 |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_284465 |
|---|
| Protein GI | 71906878 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 69 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.923892 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTTA CGCCGACCTG TATCCCTGAT GTCCTGATTA TTGAGCCAAG AGTTTTTGGG
GATGATCGCG GATTTTTTTA CGAAAGTTTC AACCAAAAGC TTTTCAACGA CGCGGTGGGT
TGCGATGTGA CCTTTGTTCA AGATAATCAT TCTAAATCTG CAAAGAACGT TCTGAGAGGG
CTCCACTACC AGTTGCCACC AAAGGAGCAA GGGAAGCTCG TGCGTGTGGT GCAGGGTGAG
GTATTTGATG TGGCGGTCGA CATCCGAAAA GATTCCCCCA CCTACGGACG ATGGGTGGGG
GTTACCCTGA GCGCCGAAAA TAAAAAGCAA ATTTGGATAC CTCAAGGCCT GGCACACGGC
TTCTTAACAT TGAGCGAAAC AGCGGAGTTC CTCTATAAAA CTACCGAGTA TTATGCGCCG
GAAGCTGAGC GATGCATTCG GTGGAACGAT TCTAAGTTGA ACATAAAGTG GCCCATTGAG
GGGGGGGCGC TGCTATCTGT CAAAGACAGT ATGGCAGACG ATTTTTGTTG GTAG
|
|---|
| Protein sequence | MIVTPTCIPD VLIIEPRVFG DDRGFFYESF NQKLFNDAVG CDVTFVQDNH SKSAKNVLRG
LHYQLPPKEQ GKLVRVVQGE VFDVAVDIRK DSPTYGRWVG VTLSAENKKQ IWIPQGLAHG
FLTLSETAEF LYKTTEYYAP EAERCIRWND SKLNIKWPIE GGALLSVKDS MADDFCW
|
|---|
| |