| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1170 |
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| Symbol | |
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| ID | 3569296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 1275267 |
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| End bp | 1276685 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637679637 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_284396 |
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| Protein GI | 71906809 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 0.126874 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCCC CTTCCTTGTC CGCTGAGGAT TTGTTCTACG AAGGCACCCG GCTGATGGGA
CTGGGGGATG TTGAAAAATC GGAGCGAGCT TTTCGGGCGG CAATCGCTGA GGCGCCGGAG
CTGGGCGAAG CACACGCCAA TCTGGGACTG CTGCTTGAAA GCGACGGTCG TACCCAGGAG
GCGGAAGCGA GCTACCGCCG GGCACTTGAA TTGGCTCCTG GGCTAAGTCA GATACACATC
AATCTTGGCG CCATGCTGGC CTCCCAAAGG CGTTTTGCCG AAGCGGAAAA CACCTACCGG
GAGGCATTGG CCGTGAATCC CGAGTCGTAC ATGGCCTGGT CCAATCTGGG CGTGCTATTG
GCTTGTGTGA AACGGGAAGC AGAGTCAGAG CAGTGTTATC GCACGGCGAT GGCGCTGGCA
CCTGACTACC GGAATGCCTC GTTCAACCTG GCTTACCTGC TGTTGCGCCA GGGGCGCTAC
GCCGAGGGCT GGCTTTGTCT GGAATCACGA GACTGGTATC AAGCGCTGGA CAAACATTTG
GGCATTCCGC GTTGGCAGGG GGAGCCTCTT GCCGGCAAGT CGTTTCTGAT TAGTCTGGAG
GCCGGGCACG GTGACATGAT TCAGTTCTGC CGCTACGCCC GGCAACTGAA AGAGCGCGGT
GCCGCAAGGG TTTCCGTGCT TTGCCATCCT GCCCTGAAAA ATCTGTTTGA TCACTTTGAC
GGCATAGATG AGGCCATTGC AGTGGGTGAC CCCTATCCGG ATCGCGCCTG GGATTGCTGG
TCGCCGCCCT TGAGCTTGCC ATTTTTTTGT CAGACTCGTC TTGAATCGAT TCCCGCCAAC
TTGCCCTATC TGAGCGCCGA TCCGGACAAG ACCAGGTACT GGGCATCGCT GATGGCAGAT
GGTGGAGATG CGCTTCGGGT CGGACTGGTC TGGAAGGGGA ATCCTCGCTT TGAGAATGAC
GCCGAGCGTT CGCTCGGTTC ATTTCTTGAT CTTGCCCCTT TGGGTGAGGT ATCTGGCGTA
CGTTTCTTCA GCCTGCAAAA AGGCGCCGGT GAAAACGAAG TCGCGCATTC GTCCGCATCT
TTTCCCGTGC TTGATCTGGG GTCGAGGCTT GCCGATTTTT CGGATACGGC GGCCATTGTG
ATGAATCTGG ATCTGCTGAT CACGGTAGAT ACTGCCGTTG CCCATCTTGC TGGCGCACTT
GGTAAACCGG TGTGGGTGAT GTTGCCCGAC TACAAAACCG ACTGGCGATG GTTAAGCGAT
CGCTCTGACT CTCCCTGGTA TCCAGGGGTG ATGCGTCTTT TTCGCCAGGA GGCATCAGGC
ACTTGGGGCA GCGTTATCTC CCGGGTGAAG GTGGCGCTGG AGGAGGAATT GAAAAAGCGC
CAAATCCATC GCTTTCTCGC CAATAACACC CGTGACTAG
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| Protein sequence | MTAPSLSAED LFYEGTRLMG LGDVEKSERA FRAAIAEAPE LGEAHANLGL LLESDGRTQE
AEASYRRALE LAPGLSQIHI NLGAMLASQR RFAEAENTYR EALAVNPESY MAWSNLGVLL
ACVKREAESE QCYRTAMALA PDYRNASFNL AYLLLRQGRY AEGWLCLESR DWYQALDKHL
GIPRWQGEPL AGKSFLISLE AGHGDMIQFC RYARQLKERG AARVSVLCHP ALKNLFDHFD
GIDEAIAVGD PYPDRAWDCW SPPLSLPFFC QTRLESIPAN LPYLSADPDK TRYWASLMAD
GGDALRVGLV WKGNPRFEND AERSLGSFLD LAPLGEVSGV RFFSLQKGAG ENEVAHSSAS
FPVLDLGSRL ADFSDTAAIV MNLDLLITVD TAVAHLAGAL GKPVWVMLPD YKTDWRWLSD
RSDSPWYPGV MRLFRQEASG TWGSVISRVK VALEEELKKR QIHRFLANNT RD
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