| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1166 |
|---|
| Symbol | |
|---|
| ID | 3569292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 1270796 |
|---|
| End bp | 1272034 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637679633 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_284392 |
|---|
| Protein GI | 71906805 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 0.912906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACATA TCGGGAAGAT TCTGATTGGG GGGGCCGTGG CGGTGGCCGT GGCTGGCGGC
GGCATCTGGT ATTCCCAGCA GCGCTCCGCC CAGAATCCTG AGCAGCGTTA CAAGCTGACC
AACATCGAGA AGGGGGATGT GACGCAGACG GTTTCTGCCA ATGGAACCCT GAATCCGCTC
GTTTTGGTGA ATGTGGGTAC GCAGGTTTCC GGGACGGTGA AGAAACTTTA CGTCGATTTC
AATGACAAGG TCAGCGCCGG GCAAAAGCTG GTCGAGCTCG ATCAGTCGCT GTTGCAGACG
ATCGTGCGGC AAAGCCAGGC GAACGTCGTT AACTTGCAGT CCTCGCTTGA TCTGGCCAAG
GCAAACGAAG CCCGGATGAA ATCCTTGCTG GCCAAGGAAT ATGTCTCCCG GCAGGATTAC
GATGTGGCGC TGCAAGGCTT GAAATCGGCC CAGGCTCAGC TGGTTCAGGC CAAAGCGGCA
GCGGATAAGG ATCAGGTTAA CCTGGGTTAT TCGGTCATTA CCTCCCCGGT GTCCGGCGTG
GTCGTGGCAA GGCTGGTCGA TATTGGCCAG ACGGTGGCCG CCAGCTTCCA GACCCCGGTG
CTGATCCAGA TCGCCCAGGA TCTTTCCAAG ATGGCGATTG ATACCAGCTT CGCCGAGGCA
GACATCGGTA ATATCAAGGA GAAATTGCCG GTTCGTTTTA CGGTTGATGC TTTCCCCAAT
CGAAATTTCC ACGGCGAGGT GCAGCAAATC CGCCTGAACC CGACCAATCA GCAGAACGTG
GTCACCTACA ACGTTCGTAT CCGGGTGGAT AACCCCGATC TGACGCTGCT GCCGGGCATG
ACGGCCTACG TCAATATCGG CGTGCAGAAG CGCGAAGGCG CGCTGTTAGT GCCGAATGCC
GCCCTGCGCT TCAAGCCGGC CGATGCGCCT GACAAGAAAG CGGGAAATGC TCAGAAACCG
GCCTCGAACG GTGGCGTGCC AAGTGCTGGG GGCGGTTCCG ATGCCTCCGC GGCGAAGGGA
CAGGGGCCTG GCAAGGGCAA GAAACGGGAT GGTCAGAGCG GAACGGTTTA CGTGCTGTCG
GGTAATGAAA TCAAGCCGGT CAGTATTCAG CTGGGTATTA CCGACAATCG CAGCACCGAA
GTGATCGGTG GCGATCTCAA GGAAGGCGAC CGCGTGGTCA CCGGTGAAAA CACCAACGGT
GTCAAGCCGC CGTCCAGCGT CGGCATGCGG ATGTTCTGA
|
|---|
| Protein sequence | MKHIGKILIG GAVAVAVAGG GIWYSQQRSA QNPEQRYKLT NIEKGDVTQT VSANGTLNPL
VLVNVGTQVS GTVKKLYVDF NDKVSAGQKL VELDQSLLQT IVRQSQANVV NLQSSLDLAK
ANEARMKSLL AKEYVSRQDY DVALQGLKSA QAQLVQAKAA ADKDQVNLGY SVITSPVSGV
VVARLVDIGQ TVAASFQTPV LIQIAQDLSK MAIDTSFAEA DIGNIKEKLP VRFTVDAFPN
RNFHGEVQQI RLNPTNQQNV VTYNVRIRVD NPDLTLLPGM TAYVNIGVQK REGALLVPNA
ALRFKPADAP DKKAGNAQKP ASNGGVPSAG GGSDASAAKG QGPGKGKKRD GQSGTVYVLS
GNEIKPVSIQ LGITDNRSTE VIGGDLKEGD RVVTGENTNG VKPPSSVGMR MF
|
|---|
| |