Gene Daro_1118 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_1118 
Symbol 
ID3570013 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp1220106 
End bp1221926 
Gene Length1821 bp 
Protein Length606 aa 
Translation table11 
GC content63% 
IMG OID637679580 
Producthelicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal 
Protein accessionYP_284344 
Protein GI71906757 
COG category[J] Translation, ribosomal structure and biogenesis
[L] Replication, recombination and repair
[K] Transcription 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones44 
Plasmid unclonability p-value0.892999 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.51461 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGACAC CTGTCGAAAG CTTTGCCGAT CTCGGTTTAA GCGAAACGCT TCTGCAAACT 
CTCACCCAAA TCGGCTACGA AACCCCGTCG CCCATTCAGG CTCAATGTAT CCCTGTTCTG
CTCGAAGGTC ATGACCTGAT CGGCATGGCC CAGACCGGCA CCGGCAAGAC CGCCGCCTTT
GCGCTGCCGC TGATGGAACA GATCGACGTC AAGCTGACCA AGCCGCAGGC GCTGATCCTG
ACGCCGACGC GCGAACTGGC CATCCAGGTC GCCGAAGCCC TGCAGACCTA CGCCAAGAAC
CTGCCCGGCT TCCACGTGCT GCCGATCTAC GGTGGCCAGA GCTACACCAT CCAGCTCAAG
CAGTTGTCGC GCGGCGCTCA CGTCATCGTC GGCACCCCGG GTCGCGTCAT GGACCACCTC
GAGCGCAAGA CGCTCAACCT CGACCACCTG AAGACCATGG TGCTCGACGA AGCCGACGAA
ATGCTGCGCA TGGGCTTCAT TGACGACGTC GAGTGGATTC TCGAACGTAC GCCAGCCCAG
CACCAGACCG CGCTGTTCTC GGCCACCATG CCGGAACAGA TTCGCCGCGT CGCCCAGAAA
TATCTGGTCG AGCCGCGCGA AATCAAGATC AAGTCAGCTA CCGCTACCGT CGCTGCCATC
CGTCAGGTTT ACTGGCAGGT TTCCGGCATG CACAAGCTGG ATGCCCTGAC CCGCATCCTC
GAAGTTGAAG AAGACTTCGA CGCGGCCATC ATCTTCGTGC GCACCAAGAC GGCCACCGTC
GAGCTGGCCG ACAAGCTGTC AGCCCGTGGT TACGCCGCCG CCGCGCTGAA CGGCGACCTC
AACCAGCAGA TGCGCGAACG CGTCATCGAG CAGTTGAAGT CGGGCGCCCT GGACATCGTC
ATTGCGACCG ACGTTGCCGC CCGCGGTATC GACGTACCGC GCGTCAGCCA CGTCGTTAAC
TACGATATTC CATACGACAC CGAAGCCTAC GTGCACCGGA TCGGCCGTAC CGGCCGCGCT
GGCCGCACCG GCAACGCCAT CCTGTTCGTC GCGCCGCGCG AAATCCGCAT GCTGCGTACA
ATCGAGCGCG CCACCCGTTC GCCGATCGCC CCGCTGACCC TGCCGAGCCG CGCCGATGTG
ACCAACAAGC GCGTTGCCGA CTTCAAGAGC AAGGTTGTTG AAGTGCTCAA CGCCGAAGGC
CTGGATTTCT TCTCGAACAT CGTCTCGCAA ATTGCCGAAG AGCAAAATGT CGGCGCCGAG
GAAGTGGCTG CTGCGCTGGC CATGATGGCT CAAGAAGGCA AGCCGCTGCA GATCGCCGGT
GAAGATCCGC GTCCGGCACC GGCGCCCCGC CCGGGCAGCT TTGGCGAAAG CGATCGCAAG
CCGCGTTTTG AAGATCGTGG CGATCGTCCA CGCTTCGAAG ATCGCGGGGA ACGGCCGCGT
CGCGAAGACC GCCCGGCTCG CCAGGCTCCG GCCGGCGACA TGGTGCGCTA CCGCATTGAC
GTGGGTCGTG ACCACGGCGT CGAAGTACGC GACATCGTCG GCGCCATCGC CAACGAAGCC
GGCATCGAAA GCCGTTTCAT CGGCCGCATC GGTCTCTACG AAGACTCCAG TACCGTTGAA
CTGCCTGCAG GCATGCCGGC CGAAGCCTCC AACGCCCTGA AGCGCACCCG CATTCGCGGC
GTGCCGATCA ACCTGCGTCC GGATGAAGGT CGTCCGGGTG CCGGCGGCGC GGGTGGCGGC
GAACGCAAGT TCGGCGGCGG TGATCGCAAG CCTGAAGGTG ATCGCGGCGG CTTCAAGAAG
AAGAAGTTCG GCGACCGCTA A
 
Protein sequence
MSTPVESFAD LGLSETLLQT LTQIGYETPS PIQAQCIPVL LEGHDLIGMA QTGTGKTAAF 
ALPLMEQIDV KLTKPQALIL TPTRELAIQV AEALQTYAKN LPGFHVLPIY GGQSYTIQLK
QLSRGAHVIV GTPGRVMDHL ERKTLNLDHL KTMVLDEADE MLRMGFIDDV EWILERTPAQ
HQTALFSATM PEQIRRVAQK YLVEPREIKI KSATATVAAI RQVYWQVSGM HKLDALTRIL
EVEEDFDAAI IFVRTKTATV ELADKLSARG YAAAALNGDL NQQMRERVIE QLKSGALDIV
IATDVAARGI DVPRVSHVVN YDIPYDTEAY VHRIGRTGRA GRTGNAILFV APREIRMLRT
IERATRSPIA PLTLPSRADV TNKRVADFKS KVVEVLNAEG LDFFSNIVSQ IAEEQNVGAE
EVAAALAMMA QEGKPLQIAG EDPRPAPAPR PGSFGESDRK PRFEDRGDRP RFEDRGERPR
REDRPARQAP AGDMVRYRID VGRDHGVEVR DIVGAIANEA GIESRFIGRI GLYEDSSTVE
LPAGMPAEAS NALKRTRIRG VPINLRPDEG RPGAGGAGGG ERKFGGGDRK PEGDRGGFKK
KKFGDR